Variant report

Variant	rs11680449
Chromosome Location	chr2:172369881-172369882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10930477	0.81[AFR][1000 genomes]
rs6725897	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172367000-172372000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:172367000-172372000	Weak transcription	NHDF-Ad	bronchial
3	chr2:172367000-172378000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:172367800-172371600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:172368000-172371200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr2:172368000-172371200	Enhancers	Primary hematopoietic stem cells	blood
7	chr2:172368000-172371200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:172368000-172371600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:172368000-172372400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr2:172368400-172370200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:172368600-172372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:172368800-172370600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr2:172369000-172370000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:172369400-172370800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:172369800-172370000	Enhancers	K562	blood
16	chr2:172369800-172370200	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links