Variant report
| Variant | rs11682751 |
|---|---|
| Chromosome Location | chr2:67914453-67914454 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr2:67914370-67914571 | HepG2 | liver: | n/a | chr2:67914503-67914518 chr2:67914503-67914514 chr2:67914503-67914519 chr2:67914503-67914514 chr2:67914502-67914516 chr2:67914504-67914515 |
| 2 | MAFK | chr2:67914428-67914645 | HepG2 | liver: | n/a | chr2:67914503-67914518 chr2:67914503-67914514 chr2:67914503-67914519 chr2:67914503-67914514 chr2:67914502-67914516 chr2:67914504-67914515 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000235495 | TF binding region |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10171129 | 1.00[YRI][hapmap] |
| rs10191839 | 1.00[YRI][hapmap] |
| rs10194664 | 1.00[YRI][hapmap] |
| rs10195055 | 1.00[YRI][hapmap] |
| rs10195947 | 1.00[YRI][hapmap] |
| rs10196069 | 1.00[YRI][hapmap] |
| rs10204184 | 0.81[YRI][hapmap] |
| rs10210853 | 1.00[YRI][hapmap] |
| rs11688644 | 1.00[YRI][hapmap] |
| rs1367461 | 1.00[YRI][hapmap] |
| rs9309403 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534389 | chr2:67388428-68225338 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007345 | chr2:67870225-67980094 | Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv834250 | chr2:67897722-68051532 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
