Variant report

Variant	rs116829422
Chromosome Location	chr15:73668186-73668187
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73667033..73669019-chr15:73678260..73680889,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1792198	chr15:73660092-73669017	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv1847480	chr15:73660092-73669461	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv1842293	chr15:73660092-73669680	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	esv1823194	chr15:73660092-73680301	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1837204	chr15:73660269-73669177	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	esv1847077	chr15:73660269-73669680	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv569969	chr15:73660615-73668907	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	esv3521611	chr15:73667999-73671397	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3521612	chr15:73667999-73671397	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73665600-73668400	Enhancers	Left Ventricle	heart
2	chr15:73665600-73668800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:73666200-73668800	Enhancers	Right Ventricle	heart
4	chr15:73666600-73668600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:73666800-73668200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:73666800-73668800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr15:73667000-73668200	Bivalent Enhancer	Fetal Stomach	stomach
8	chr15:73667000-73668400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr15:73667000-73668400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:73667000-73668600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr15:73667000-73672600	Enhancers	Fetal Heart	heart
12	chr15:73667600-73668200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:73667600-73668200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr15:73667600-73668200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr15:73667600-73668600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr15:73667600-73668600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:73667800-73668200	Enhancers	Right Atrium	heart
18	chr15:73667800-73668400	Enhancers	Brain Germinal Matrix	brain
19	chr15:73668000-73668200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:73668000-73668400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr15:73668000-73668400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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