Variant report

Variant	rs1168329
Chromosome Location	chr12:66731864-66731865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:66720021..66726228-chr12:66728171..66733015,6	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1027399	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1027400	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1027401	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1039056	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1060724	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10784525	0.87[EUR][1000 genomes]
rs1168290	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168291	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168292	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168293	0.98[EUR][1000 genomes]
rs1168294	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168295	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1168296	0.97[EUR][1000 genomes]
rs1168297	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168298	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1168299	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168300	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168301	0.97[EUR][1000 genomes]
rs1168302	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168303	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168304	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168305	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168306	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168307	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168309	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168310	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[GIH][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs1168311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168314	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168315	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168316	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168317	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1168318	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168319	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168320	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168321	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168322	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1168325	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1168327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168330	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1168332	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1168333	0.94[EUR][1000 genomes]
rs1168334	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1168338	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168339	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168340	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1168341	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168342	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168343	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168344	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168345	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168346	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168347	0.92[EUR][1000 genomes]
rs1168348	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1168351	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168352	0.95[EUR][1000 genomes]
rs1168353	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1168356	0.95[EUR][1000 genomes]
rs1168357	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1168358	0.95[EUR][1000 genomes]
rs1177555	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1179889	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1183272	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1183274	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1184551	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1184552	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1185244	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495497	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1625394	0.84[CEU][hapmap]
rs1795527	0.85[EUR][1000 genomes]
rs1795529	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2172881	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2951656	0.95[EUR][1000 genomes]
rs4762091	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61925898	0.86[EUR][1000 genomes]
rs6581677	0.81[ASW][hapmap];0.92[CEU][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6581678	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs903587	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs903589	0.95[EUR][1000 genomes]
rs903590	0.95[EUR][1000 genomes]
rs961049	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1168329	HELB	Cis_1M	lymphoblastoid	RTeQTL
rs1168329	HELB	cis	cerebellum	SCAN
rs1168329	HELB	cis	parietal	SCAN

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66696800-66734200	Weak transcription	HSMMtube	muscle
2	chr12:66697200-66733800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:66697200-66734800	Weak transcription	Esophagus	oesophagus
4	chr12:66697200-66735000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:66697200-66742200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:66697400-66732200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:66697400-66732400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr12:66697400-66735000	Weak transcription	Right Ventricle	heart
9	chr12:66698200-66735000	Weak transcription	Fetal Brain Female	brain
10	chr12:66698400-66732400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr12:66698400-66734800	Weak transcription	HepG2	liver
12	chr12:66699000-66735000	Weak transcription	K562	blood
13	chr12:66702600-66734800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:66704200-66733600	Weak transcription	A549	lung
15	chr12:66704200-66735000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr12:66704400-66732200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr12:66704400-66733600	Weak transcription	Brain Anterior Caudate	brain
18	chr12:66704400-66741800	Weak transcription	Hela-S3	cervix
19	chr12:66705800-66732400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr12:66705800-66732600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr12:66705800-66734800	Weak transcription	Fetal Stomach	stomach
22	chr12:66706200-66732600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr12:66708200-66732400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr12:66710200-66733400	Weak transcription	Fetal Lung	lung
25	chr12:66710200-66792800	Weak transcription	Fetal Kidney	kidney
26	chr12:66714600-66733600	Strong transcription	Primary T cells from cord blood	blood
27	chr12:66715600-66733600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr12:66715600-66734800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr12:66715600-66736600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr12:66716000-66733400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr12:66716600-66734800	Weak transcription	NH-A	brain
32	chr12:66717400-66732400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr12:66717400-66733400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:66721400-66733600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr12:66721400-66734800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr12:66721800-66733600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr12:66722600-66735000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr12:66723200-66734800	Weak transcription	Brain Hippocampus Middle	brain
39	chr12:66723800-66734000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr12:66724000-66733600	Weak transcription	Brain Substantia Nigra	brain
41	chr12:66724000-66735000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr12:66724200-66734800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr12:66724200-66745400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr12:66724600-66734800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr12:66725400-66732200	Weak transcription	Fetal Intestine Small	intestine
46	chr12:66725400-66732400	Weak transcription	Lung	lung
47	chr12:66725400-66734600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr12:66725400-66735400	Weak transcription	Colonic Mucosa	Colon
49	chr12:66725400-66746400	Weak transcription	Small Intestine	intestine
50	chr12:66725600-66742800	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links