Variant report

Variant	rs11683459
Chromosome Location	chr2:187601639-187601640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10931252	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.93[ASN][1000 genomes]
rs10931254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1123176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11678136	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11684356	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs11684434	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11684626	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11695399	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11885414	0.93[ASN][1000 genomes]
rs11885416	0.93[ASN][1000 genomes]
rs11886619	0.93[ASN][1000 genomes]
rs11891192	0.93[ASN][1000 genomes]
rs11891461	0.93[ASN][1000 genomes]
rs11902171	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs11903048	0.82[ASN][1000 genomes]
rs12612335	0.86[CHB][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12614008	0.93[ASN][1000 genomes]
rs12617531	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12619357	0.93[ASN][1000 genomes]
rs12621915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16828148	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs16828163	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs16828175	0.93[ASN][1000 genomes]
rs16828182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16828214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2595389	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap];0.88[ASN][1000 genomes]
rs2887831	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3213963	0.88[ASN][1000 genomes]
rs36079004	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3738919	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs3768784	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs3768787	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs3795865	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs3820739	0.81[ASN][1000 genomes]
rs3886170	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs58757504	0.88[ASN][1000 genomes]
rs61762241	0.81[ASN][1000 genomes]
rs61764186	0.90[ASN][1000 genomes]
rs61764188	0.90[ASN][1000 genomes]
rs61764575	0.90[ASN][1000 genomes]
rs61764576	0.93[ASN][1000 genomes]
rs61764580	0.93[ASN][1000 genomes]
rs61765186	0.83[ASN][1000 genomes]
rs6723908	0.93[YRI][hapmap]
rs72905143	0.93[ASN][1000 genomes]
rs72905150	0.93[ASN][1000 genomes]
rs72905152	0.93[ASN][1000 genomes]
rs72905154	0.84[ASN][1000 genomes]
rs72905160	0.93[ASN][1000 genomes]
rs72905169	0.95[ASN][1000 genomes]
rs7584329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7589682	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187592200-187618600	Weak transcription	Osteobl	bone
2	chr2:187595200-187602600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:187596600-187611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:187596600-187626200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:187598600-187621200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:187599000-187601800	Weak transcription	Ovary	ovary
7	chr2:187599600-187631000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:187600000-187601800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:187600000-187602200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:187600000-187602600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:187600000-187613200	Weak transcription	Pancreas	Pancrea
12	chr2:187600200-187601800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr2:187600200-187602600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:187600200-187611000	Weak transcription	Brain Angular Gyrus	brain
15	chr2:187601000-187601800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:187601200-187602000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:187601600-187602000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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