Variant report

Variant	rs11683932
Chromosome Location	chr2:63049811-63049812
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63048902..63052950-chr2:63053080..63055706,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10166922	1.00[CHB][hapmap]
rs11686081	1.00[LWK][hapmap]
rs13313805	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap]
rs13397638	1.00[LWK][hapmap]
rs13408060	1.00[TSI][hapmap]
rs13417661	1.00[LWK][hapmap]
rs17473979	1.00[LWK][hapmap]
rs4633915	1.00[LWK][hapmap]
rs6729573	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv428041	chr2:63027947-63206574	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63020600-63082000	Weak transcription	Pancreas	Pancrea
2	chr2:63028600-63063400	Weak transcription	Brain Substantia Nigra	brain
3	chr2:63031000-63083000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr2:63031400-63082000	Weak transcription	Thymus	Thymus
5	chr2:63031600-63053800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr2:63033800-63052800	Weak transcription	Primary T cells from cord blood	blood
7	chr2:63033800-63060600	Weak transcription	Aorta	Aorta
8	chr2:63034400-63054000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:63035200-63053000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr2:63038200-63054000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr2:63040600-63082000	Weak transcription	Lung	lung
12	chr2:63040800-63053400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:63041000-63053200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:63041400-63053200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr2:63041600-63053200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:63041600-63060400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr2:63041800-63052400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:63041800-63053200	Weak transcription	Adipose Nuclei	Adipose
19	chr2:63041800-63054000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:63041800-63060400	Weak transcription	K562	blood
21	chr2:63042000-63054200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr2:63044000-63060200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr2:63045000-63053200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:63045000-63053200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:63045400-63060200	Weak transcription	Psoas Muscle	Psoas
26	chr2:63045600-63053200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:63045600-63053200	Weak transcription	Ovary	ovary
28	chr2:63045600-63072400	Weak transcription	NHEK	skin
29	chr2:63045800-63052200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:63045800-63052200	Weak transcription	NHDF-Ad	bronchial
31	chr2:63045800-63052800	Weak transcription	HMEC	breast
32	chr2:63045800-63053200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:63046000-63053000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:63046400-63101800	Weak transcription	Brain Angular Gyrus	brain
35	chr2:63048200-63054000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr2:63048600-63052600	Enhancers	Liver	Liver
37	chr2:63048600-63055800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr2:63048800-63052200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr2:63048800-63054200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr2:63048800-63063400	Weak transcription	Right Ventricle	heart
41	chr2:63049000-63050000	Enhancers	Rectal Smooth Muscle	rectum
42	chr2:63049200-63050000	Enhancers	HepG2	liver
43	chr2:63049200-63051200	Enhancers	A549	lung
44	chr2:63049200-63053800	Weak transcription	GM12878-XiMat	blood
45	chr2:63049400-63050800	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr2:63049400-63052200	Enhancers	Fetal Heart	heart
47	chr2:63049400-63054000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr2:63049600-63051200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr2:63049600-63053200	Weak transcription	Fetal Intestine Large	intestine
50	chr2:63049600-63065800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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