Variant report

Variant	rs11684073
Chromosome Location	chr2:177544555-177544556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10167800	0.94[EUR][1000 genomes]
rs10171450	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10202329	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10930743	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11677546	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11678223	0.87[EUR][1000 genomes]
rs11678224	0.87[EUR][1000 genomes]
rs11679256	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11680962	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11682710	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11682767	0.86[EUR][1000 genomes]
rs11690892	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11694028	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11897427	0.93[EUR][1000 genomes]
rs13394213	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13407601	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13428125	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1448530	0.85[EUR][1000 genomes]
rs1448533	0.86[EUR][1000 genomes]
rs16864070	0.81[EUR][1000 genomes]
rs17404347	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17404452	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17661657	0.82[EUR][1000 genomes]
rs2029039	0.81[EUR][1000 genomes]
rs2362867	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2594946	0.85[EUR][1000 genomes]
rs2710020	0.93[EUR][1000 genomes]
rs2710025	0.89[EUR][1000 genomes]
rs34350027	0.89[EUR][1000 genomes]
rs72930256	0.81[AFR][1000 genomes]
rs73039435	0.89[EUR][1000 genomes]
rs7575652	0.90[EUR][1000 genomes]
rs963649	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177534800-177545600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:177537000-177545200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:177541000-177544600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:177542200-177547200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:177543400-177544600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:177543400-177544800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:177543600-177545400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:177543800-177544600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:177543800-177544600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:177543800-177545200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:177543800-177547400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:177544000-177552400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:177544200-177547200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links