Variant report

Variant	rs11684406
Chromosome Location	chr2:183292868-183292869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10497598	0.84[JPT][hapmap]
rs10497600	0.84[JPT][hapmap]
rs10931012	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11686025	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs11689230	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs12468743	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12693306	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12693307	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12989198	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13407156	0.82[JPT][hapmap]
rs1346773	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1370669	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1430147	0.84[JPT][hapmap]
rs1430148	0.84[JPT][hapmap]
rs1430158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1560370	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1560371	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1560372	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1583114	0.85[JPT][hapmap]
rs17265027	0.84[JPT][hapmap]
rs17265041	0.82[ASN][1000 genomes]
rs17343416	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17356152	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1946815	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs34889222	0.82[EUR][1000 genomes]
rs4091077	0.92[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62188264	0.85[ASN][1000 genomes]
rs6740889	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834481	chr2:183189758-183339577	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183284800-183293000	Active TSS	Aorta	Aorta
2	chr2:183285400-183293400	Active TSS	Stomach Smooth Muscle	stomach
3	chr2:183285400-183293800	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr2:183290400-183297600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:183292000-183300000	Weak transcription	NHDF-Ad	bronchial
6	chr2:183292400-183296200	Weak transcription	Osteobl	bone
7	chr2:183292400-183296400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:183292600-183293600	Enhancers	Fetal Kidney	kidney
9	chr2:183292800-183293000	Enhancers	Primary hematopoietic stem cells	blood
10	chr2:183292800-183293200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:183292800-183293200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:183292800-183300400	Weak transcription	Muscle Satellite Cultured Cells	--

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