Variant report

Variant	rs11684692
Chromosome Location	chr2:100673411-100673412
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:100672616..100673492-chr2:100682963..100683954,3	MCF-7	breast:
2	chr2:100252850..100253419-chr2:100672872..100673558,3	MCF-7	breast:
3	chr2:100668681..100670684-chr2:100672426..100674469,2	MCF-7	breast:
4	chr2:100664157..100666108-chr2:100671125..100674050,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11675333	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11680846	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11685258	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11685397	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11688877	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11691359	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11692695	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11693242	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11693804	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11695782	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12998219	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13019124	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1437379	0.84[AFR][1000 genomes]
rs17352731	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17437470	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1821831	0.90[EUR][1000 genomes]
rs1866033	0.87[ASN][1000 genomes]
rs34754366	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34851723	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34860145	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35167301	0.84[EUR][1000 genomes]
rs35462405	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35720347	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35742951	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6724583	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6736637	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6738012	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6740622	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6748064	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74177693	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7594938	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100656400-100680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:100656600-100686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:100659400-100680000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:100660600-100678200	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:100662200-100684800	Weak transcription	Ovary	ovary
6	chr2:100662800-100674200	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:100663000-100680800	Weak transcription	Fetal Kidney	kidney
8	chr2:100663000-100682200	Weak transcription	Fetal Heart	heart
9	chr2:100664400-100699600	Weak transcription	Aorta	Aorta
10	chr2:100666800-100675000	Strong transcription	Primary B cells from cord blood	blood
11	chr2:100666800-100675800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr2:100667800-100688000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr2:100669400-100675400	Weak transcription	Thymus	Thymus
14	chr2:100669400-100676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:100669400-100681200	Weak transcription	Brain Germinal Matrix	brain
16	chr2:100669800-100680600	Weak transcription	Fetal Brain Female	brain
17	chr2:100670200-100673600	Enhancers	Placenta	Placenta
18	chr2:100670800-100676000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:100671200-100678600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr2:100671800-100676200	Weak transcription	Gastric	stomach
21	chr2:100671800-100676400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr2:100672400-100674600	Enhancers	Fetal Lung	lung
23	chr2:100672400-100675600	Weak transcription	Primary T cells from cord blood	blood
24	chr2:100672600-100675200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr2:100672800-100673800	Enhancers	Fetal Thymus	thymus
26	chr2:100672800-100674000	Enhancers	Dnd41	blood
27	chr2:100672800-100675000	Enhancers	Osteobl	bone
28	chr2:100672800-100682400	Weak transcription	Fetal Brain Male	brain
29	chr2:100673200-100674000	Weak transcription	NH-A	brain
30	chr2:100673200-100674600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:100673400-100675000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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