Variant report

Variant	rs116848652
Chromosome Location	chr6:29395950-29395951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29395950-29396000	MCF-7	breast:	n/a
2	chr6:29395950-29396000	HEEpiC	esophagus:	n/a
3	chr6:29395950-29396000	SK-N-SH	brain:	n/a
4	chr6:29395950-29396000	HCT-116	colon:	n/a
5	chr6:29395950-29396000	NT2-D1	testis:	n/a
6	chr6:29395950-29396000	HUVEC	blood vessel:	n/a
7	chr6:29395950-29396000	ovcar-3	ovarian:	n/a
8	chr6:29395950-29396000	ProgFib	skin:	n/a
9	chr6:29395950-29396000	PrEC	prostate:	n/a
10	chr6:29395950-29396000	HCM	heart:	n/a
11	chr6:29395950-29396000	NB4	blood:	n/a
12	chr6:29395950-29396000	HRPEpiC	eye:	n/a
13	chr6:29395950-29396000	HMEC	breast:	n/a
14	chr6:29395950-29396000	AoSMC	blood vessel:	n/a
15	chr6:29395950-29396000	HRE	kidney:	n/a
16	chr6:29395950-29396000	U87	brain:	n/a
17	chr6:29395950-29396000	HCF	heart:	n/a
18	chr6:29395950-29396000	HepG2	liver:	n/a
19	chr6:29395950-29396000	T-47D	breast:	n/a
20	chr6:29395950-29396000	SK-N-MC	brain:	n/a
21	chr6:29395950-29396000	GM12891	blood:	n/a
22	chr6:29395950-29396000	HPAEpiC	pulmonary alveolar:	n/a
23	chr6:29395950-29396000	ECC-1	luminal epithelium:	n/a
24	chr6:29395950-29396000	AG09319	gingival:	n/a
25	chr6:29395950-29396000	BJ	skin:	n/a
26	chr6:29395950-29396000	RPTEC	kidney:	n/a
27	chr6:29395950-29396000	AG04449	skin:	fetal
28	chr6:29395950-29396000	A549	lung:	n/a
29	chr6:29395950-29396000	SAEC	small airway:	n/a
30	chr6:29395950-29396000	HAEpiC	amniotic membrane:	n/a
31	chr6:29395950-29396000	Jurkat	blood:	n/a
32	chr6:29395950-29396000	HIPEpiC	eye:	n/a
33	chr6:29395950-29396000	NHDF-neo	bronchial:	n/a
34	chr6:29395950-29396000	GM12878	blood:	n/a
35	chr6:29395950-29396000	PFSK-1	brain:	n/a
36	chr6:29395950-29396000	NH-A	brain:	n/a
37	chr6:29395950-29396000	AG04450	lung:	fetal
38	chr6:29395950-29396000	Hela-S3	cervix:	n/a
39	chr6:29395950-29396000	H1-hESC	embryonic stem cell:	embryo
40	chr6:29395950-29396000	AG10803	skin:	n/a
41	chr6:29395950-29396000	HL-60	blood:	n/a
42	chr6:29395950-29396000	K562	blood:	n/a
43	chr6:29395950-29396000	AG09309	skin:	n/a
44	chr6:29395950-29396000	HCPEpiC	choroid plexus:	n/a
45	chr6:29395950-29396000	SKMC	muscle:	n/a
46	chr6:29395950-29396000	IMR90	lung:	fetal
47	chr6:29395950-29396000	Hepatocyte	liver:	n/a
48	chr6:29395950-29396000	GM19239	blood:	n/a
49	chr6:29395950-29396000	HNPCEpiC	eye:	n/a
50	chr6:29395950-29396000	HRCEpiC	kidney:	n/a

No data

Variant related genes	Relation type
OR11A1	CpG island

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv965635	chr6:29395355-29402762	Enhancers Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29392600-29399800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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