Variant report

Variant	rs11685697
Chromosome Location	chr2:10145653-10145654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10141011..10144036-chr2:10144143..10145916,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYS1-3	chr2:10145573-10146051	XLOC_001983
2	lnc-CYS1-3	chr2:10144675-10146158	ENSG00000188525.3

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10929626	0.84[LWK][hapmap]
rs16867278	0.84[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011125	chr2:9996740-10293803	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv1011689	chr2:10023891-10293803	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv1002769	chr2:10064511-10157028	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv997334	chr2:10080327-10189279	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv828297	chr2:10109299-10236332	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10115000-10148000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:10124800-10149400	Weak transcription	Brain Anterior Caudate	brain
3	chr2:10125000-10147600	Weak transcription	K562	blood
4	chr2:10125000-10149400	Weak transcription	Psoas Muscle	Psoas
5	chr2:10125200-10150000	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:10128000-10146400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:10131600-10149600	Weak transcription	Brain Substantia Nigra	brain
8	chr2:10132200-10146800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr2:10132400-10146400	Weak transcription	Left Ventricle	heart
10	chr2:10132400-10146800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr2:10133200-10146400	Weak transcription	Colon Smooth Muscle	Colon
12	chr2:10134000-10145800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:10134200-10147000	Weak transcription	HSMMtube	muscle
14	chr2:10134800-10150600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:10135400-10146400	Weak transcription	HUVEC	blood vessel
16	chr2:10137000-10148000	Weak transcription	Hela-S3	cervix
17	chr2:10137200-10146200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:10137600-10146400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:10137600-10146600	Weak transcription	Fetal Heart	heart
20	chr2:10137600-10146800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr2:10137600-10149800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:10137800-10146400	Weak transcription	Fetal Brain Female	brain
23	chr2:10139600-10147000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:10139800-10146400	Weak transcription	Gastric	stomach
25	chr2:10139800-10150400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr2:10141000-10147000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:10141400-10146400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr2:10141400-10146800	Weak transcription	Lung	lung
29	chr2:10141600-10160200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr2:10142000-10146400	Weak transcription	Liver	Liver
31	chr2:10142000-10147600	Weak transcription	HepG2	liver
32	chr2:10142400-10148200	Enhancers	Adipose Nuclei	Adipose
33	chr2:10142600-10147000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:10142800-10145800	Enhancers	NHDF-Ad	bronchial
35	chr2:10142800-10148000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr2:10143800-10145800	Weak transcription	Pancreas	Pancrea
37	chr2:10143800-10147200	Weak transcription	Osteobl	bone
38	chr2:10144200-10146800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr2:10144200-10146800	Weak transcription	Esophagus	oesophagus
40	chr2:10144400-10147200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr2:10144800-10146600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr2:10144800-10147200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr2:10145200-10146600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr2:10145600-10145800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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