Variant report

Variant	rs11685932
Chromosome Location	chr2:234166322-234166323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:234164837..234166394-chr2:234168045..234170363,2	MCF-7	breast:
2	chr2:234164721..234166387-chr2:234329039..234331585,2	K562	blood:
3	chr2:234161323..234164097-chr2:234164693..234167813,4	K562	blood:
4	chr2:234158513..234163302-chr2:234165991..234171009,7	K562	blood:

Variant related genes	Relation type
ENSG00000085978	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1045095	0.86[CHB][hapmap]
rs10929033	0.86[ASN][1000 genomes]
rs11894529	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs13005285	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1596016	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1816753	0.82[EUR][1000 genomes]
rs2119504	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241876	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs2241877	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs2289475	0.81[CEU][hapmap];0.96[CHB][hapmap];0.92[ASN][1000 genomes]
rs35812841	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3749079	0.86[ASN][1000 genomes]
rs3792110	0.81[CEU][hapmap];0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs4663136	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs6431259	0.87[ASN][1000 genomes]
rs6431262	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs6431270	0.82[ASN][1000 genomes]
rs6431655	0.87[CHB][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6431659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6737398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6754677	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6861	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs7563345	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7587633	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs930449	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234161400-234166800	Weak transcription	Esophagus	oesophagus
2	chr2:234161400-234170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:234161400-234170600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:234161400-234170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:234161600-234167600	Weak transcription	Stomach Mucosa	stomach
6	chr2:234161800-234169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:234161800-234171800	Weak transcription	Fetal Kidney	kidney
8	chr2:234161800-234180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr2:234162200-234167000	Weak transcription	Lung	lung
10	chr2:234162200-234205200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:234162200-234205200	Strong transcription	Fetal Muscle Trunk	muscle
12	chr2:234162400-234170000	Weak transcription	Fetal Brain Male	brain
13	chr2:234162400-234192000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:234162400-234196400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:234162400-234205200	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr2:234162400-234205400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:234162600-234176200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr2:234162600-234188600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr2:234162600-234192400	Strong transcription	Osteobl	bone
20	chr2:234162600-234205000	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr2:234162600-234205200	Strong transcription	Fetal Muscle Leg	muscle
22	chr2:234162800-234166800	Weak transcription	Aorta	Aorta
23	chr2:234162800-234167000	Weak transcription	Right Ventricle	heart
24	chr2:234162800-234167800	Weak transcription	Brain Hippocampus Middle	brain
25	chr2:234162800-234170200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr2:234162800-234194000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:234162800-234197000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr2:234162800-234205600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr2:234163000-234166800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr2:234163000-234167400	Weak transcription	Brain Substantia Nigra	brain
31	chr2:234163000-234170200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr2:234163000-234170800	Weak transcription	Fetal Heart	heart
33	chr2:234163000-234175600	Strong transcription	Fetal Thymus	thymus
34	chr2:234163000-234176200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr2:234163000-234192200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr2:234163000-234192200	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr2:234163200-234166800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr2:234163200-234166800	Weak transcription	Brain Angular Gyrus	brain
39	chr2:234163200-234166800	Weak transcription	Small Intestine	intestine
40	chr2:234163200-234166800	Weak transcription	Spleen	Spleen
41	chr2:234163200-234167000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr2:234163200-234168000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr2:234163200-234169000	Weak transcription	Pancreas	Pancrea
44	chr2:234163200-234169400	Weak transcription	NHLF	lung
45	chr2:234163200-234175600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr2:234163200-234177800	Strong transcription	NHEK	skin
47	chr2:234163200-234188000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr2:234163200-234188800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr2:234163200-234206000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr2:234163400-234166600	Weak transcription	Brain Germinal Matrix	brain

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