Variant report

Variant	rs11685945
Chromosome Location	chr2:211485407-211485408
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10176085	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11680040	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11684318	0.82[JPT][hapmap]
rs12468557	0.94[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes]
rs12694206	1.00[JPT][hapmap]
rs6750325	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs7568329	0.81[AMR][1000 genomes]
rs7587791	1.00[JPT][hapmap]
rs7607205	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7607412	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs9288418	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1013658	chr2:211447246-211809945	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536135	chr2:211447246-211809945	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11685945	ACADL	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211471800-211494000	Weak transcription	Fetal Intestine Small	intestine
2	chr2:211483200-211486600	Strong transcription	Duodenum Mucosa	Duodenum
3	chr2:211483400-211493200	Strong transcription	Liver	Liver
4	chr2:211484800-211486000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:211485000-211485800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:211485000-211486000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:211485000-211486000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:211485000-211493600	Strong transcription	Fetal Intestine Large	intestine
9	chr2:211485200-211485600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:211485200-211485600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:211485200-211485600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:211485200-211485800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr2:211485200-211485800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr2:211485200-211485800	Genic enhancers	Hela-S3	cervix
15	chr2:211485200-211486000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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