Variant report

Variant	rs116861666
Chromosome Location	chr3:195946571-195946572
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:195945138..195947988-chr3:195949670..195951213,2	MCF-7	breast:
2	chr3:195942995..195944795-chr3:195945273..195947923,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163959	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2757913	chr3:195379484-196071593	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv532213	chr3:195643944-196063636	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv997797	chr3:195658360-196212958	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
5	nsv878171	chr3:195677895-195959924	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv1008512	chr3:195709662-195974936	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
7	nsv432543	chr3:195746690-196015690	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
8	nsv1009105	chr3:195769609-195984388	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv1009811	chr3:195851796-196138071	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
10	nsv878174	chr3:195858887-195949541	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	nsv461131	chr3:195858887-196072442	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
12	nsv593071	chr3:195858887-196072442	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
13	nsv1009178	chr3:195864466-196081670	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
14	nsv536892	chr3:195864466-196081670	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
15	nsv1003550	chr3:195885340-196159824	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
16	nsv536893	chr3:195885340-196159824	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
17	nsv878175	chr3:195907653-195973244	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv1014159	chr3:195908999-195968512	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
19	nsv878176	chr3:195926234-195959924	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
20	nsv878177	chr3:195929268-195949541	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv878178	chr3:195929268-195998451	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	nsv878179	chr3:195929268-196019680	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
23	nsv1014563	chr3:195934010-196085951	Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
24	nsv593072	chr3:195946535-195950490	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	nsv878180	chr3:195946535-196066569	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
26	nsv878181	chr3:195946535-196072442	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195944000-195950000	Weak transcription	Gastric	stomach
2	chr3:195944200-195950000	Weak transcription	Pancreas	Pancrea
3	chr3:195944200-195964000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:195944800-195947000	Enhancers	Fetal Intestine Large	intestine
5	chr3:195945000-195968400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:195945200-195947200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:195945200-195947200	Enhancers	Fetal Muscle Leg	muscle
8	chr3:195945400-195946800	Flanking Active TSS	Dnd41	blood
9	chr3:195945600-195948400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr3:195945800-195946800	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr3:195945800-195946800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr3:195945800-195947200	Enhancers	Fetal Muscle Trunk	muscle
13	chr3:195945800-195948000	Weak transcription	Fetal Intestine Small	intestine
14	chr3:195945800-195948600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr3:195946000-195946600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:195946000-195946600	Flanking Active TSS	Primary B cells from peripheral blood	blood
17	chr3:195946000-195946600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:195946000-195946600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:195946000-195946600	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr3:195946000-195946600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr3:195946000-195946600	Flanking Active TSS	NHEK	skin
22	chr3:195946000-195946800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
23	chr3:195946000-195946800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
24	chr3:195946000-195946800	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr3:195946000-195946800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr3:195946000-195946800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:195946000-195946800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr3:195946000-195946800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:195946000-195946800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:195946000-195946800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr3:195946000-195946800	Flanking Active TSS	Fetal Brain Female	brain
32	chr3:195946000-195946800	Flanking Active TSS	GM12878-XiMat	blood
33	chr3:195946000-195947000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:195946000-195947000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:195946200-195946600	Enhancers	H1 Cell Line	embryonic stem cell
36	chr3:195946200-195946600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:195946200-195946600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:195946200-195946600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:195946200-195946600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr3:195946200-195946600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr3:195946200-195946600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:195946200-195946600	Flanking Active TSS	Liver	Liver
43	chr3:195946200-195946600	Flanking Active TSS	Brain Angular Gyrus	brain
44	chr3:195946200-195946600	Flanking Active TSS	Brain Anterior Caudate	brain
45	chr3:195946200-195946600	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr3:195946200-195946600	Flanking Active TSS	Brain Germinal Matrix	brain
47	chr3:195946200-195946600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr3:195946200-195946600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr3:195946200-195946600	Flanking Active TSS	Brain Substantia Nigra	brain
50	chr3:195946200-195946600	Flanking Active TSS	Fetal Brain Male	brain

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