Variant report

Variant	rs11686909
Chromosome Location	chr2:173287607-173287608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11687010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv875414	chr2:173267081-173307756	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1847874	chr2:173277361-173308318	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173274600-173290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173285200-173291800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:173285200-173291800	Enhancers	Fetal Thymus	thymus
4	chr2:173286000-173287800	Weak transcription	Fetal Kidney	kidney
5	chr2:173286600-173290400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:173287200-173288600	Enhancers	Thymus	Thymus
7	chr2:173287200-173288600	Enhancers	Dnd41	blood
8	chr2:173287400-173287800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:173287400-173288000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:173287400-173288400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:173287400-173289400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr2:173287600-173287800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:173287600-173287800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr2:173287600-173288200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr2:173287600-173288200	Enhancers	Primary T cells from cord blood	blood
16	chr2:173287600-173288400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr2:173287600-173288400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr2:173287600-173290600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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