Variant report

Variant	rs11688089
Chromosome Location	chr2:36968874-36968875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10490664	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11688239	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11894158	0.88[ASN][1000 genomes]
rs11894448	0.83[ASN][1000 genomes]
rs11900660	0.82[JPT][hapmap]
rs12469652	0.88[CEU][hapmap]
rs17492833	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2160337	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs56126792	0.83[ASN][1000 genomes]
rs72783180	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783182	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36958000-36970800	Weak transcription	Ovary	ovary
2	chr2:36960200-36980400	Weak transcription	NHDF-Ad	bronchial
3	chr2:36961000-36971000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:36961800-36969600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:36965200-36979400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:36966800-36969600	Enhancers	Fetal Stomach	stomach
7	chr2:36967000-36969000	Enhancers	Primary hematopoietic stem cells	blood
8	chr2:36967000-36969000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:36968200-36969000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:36968200-36969000	Bivalent Enhancer	Fetal Thymus	thymus
11	chr2:36968400-36969600	Enhancers	Fetal Muscle Leg	muscle
12	chr2:36968800-36969000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:36968800-36969400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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