Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10496971	0.85[AMR][1000 genomes]
rs11679718	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12616953	0.80[AMR][1000 genomes]
rs12621647	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13001583	0.88[AMR][1000 genomes]
rs13004410	0.89[AMR][1000 genomes]
rs13009916	0.88[AMR][1000 genomes]
rs13010262	0.88[AMR][1000 genomes]
rs13010313	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1371047	0.83[AMR][1000 genomes]
rs1438897	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1438898	0.83[ASN][1000 genomes]
rs16824386	1.00[LWK][hapmap];0.85[MEX][hapmap];0.88[AMR][1000 genomes]
rs1898732	0.86[AMR][1000 genomes]
rs1918876	1.00[ASW][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap]
rs2077917	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs34948552	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34985138	0.89[AMR][1000 genomes]
rs35844147	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4662406	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56014517	0.82[AMR][1000 genomes]
rs56795645	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67969609	0.83[AMR][1000 genomes]
rs72854449	0.83[ASN][1000 genomes]
rs9646682	0.81[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145706400-145710800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:145706600-145710800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr2:145709200-145712600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:145710000-145722600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: