Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DIRC1-2	chr2:189091078-189093262	NONHSAT076027

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10193506	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs10931343	0.81[AMR][1000 genomes]
rs10931346	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11687248	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs11692963	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11900558	0.81[AMR][1000 genomes]
rs12464904	0.80[EUR][1000 genomes]
rs12693487	0.81[AMR][1000 genomes]
rs13429603	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35686501	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4396679	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4413123	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4641903	0.81[AMR][1000 genomes]
rs6434269	0.82[CEU][hapmap]
rs6744150	0.81[AMR][1000 genomes]
rs6753371	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs7585703	0.82[CEU][hapmap]
rs7598785	0.81[AMR][1000 genomes]
rs7608715	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893745	0.82[CEU][hapmap];0.90[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv431879	chr2:189079494-189118494	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189090400-189096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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