Variant report

Variant	rs11690823
Chromosome Location	chr2:37359311-37359312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37352888..37355726-chr2:37357727..37359383,2	K562	blood:
2	chr2:37357539..37359526-chr2:37365167..37367263,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10153588	1.00[TSI][hapmap]
rs12995738	0.84[AFR][1000 genomes]
rs2540994	0.83[ASW][hapmap];1.00[TSI][hapmap]
rs2888443	0.84[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs4503966	0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4648181	0.92[ASW][hapmap];0.80[YRI][hapmap]
rs4670656	0.85[AMR][1000 genomes]
rs6708710	1.00[TSI][hapmap]
rs6743906	0.92[ASW][hapmap];1.00[TSI][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37312200-37383200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:37313400-37361800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:37315600-37367000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:37319200-37377200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr2:37320600-37368000	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr2:37332600-37375200	Strong transcription	Liver	Liver
7	chr2:37333200-37379600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:37333400-37362400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:37333400-37366400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:37335600-37370400	Weak transcription	Fetal Heart	heart
11	chr2:37336400-37383200	Weak transcription	Psoas Muscle	Psoas
12	chr2:37336800-37360000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr2:37339800-37376800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:37341600-37369000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:37342200-37367800	Strong transcription	Fetal Stomach	stomach
16	chr2:37342400-37376400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:37342400-37376400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr2:37342400-37376600	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr2:37346400-37360400	Weak transcription	Fetal Brain Male	brain
20	chr2:37346400-37376200	Strong transcription	Fetal Intestine Large	intestine
21	chr2:37346600-37359800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr2:37346600-37373200	Weak transcription	Stomach Mucosa	stomach
23	chr2:37347600-37376400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:37347800-37376400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:37347800-37376400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr2:37348200-37359800	Strong transcription	Placenta	Placenta
27	chr2:37348400-37376000	Strong transcription	Adipose Nuclei	Adipose
28	chr2:37348400-37377000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:37348600-37371000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:37348600-37376200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr2:37348600-37376600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:37348600-37377200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr2:37348600-37377400	Strong transcription	Dnd41	blood
34	chr2:37348800-37364000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr2:37348800-37369600	Strong transcription	Primary T cells from cord blood	blood
36	chr2:37348800-37376200	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr2:37348800-37376400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr2:37348800-37376600	Strong transcription	Fetal Thymus	thymus
39	chr2:37348800-37376800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr2:37349000-37368600	Strong transcription	Primary hematopoietic stem cells	blood
41	chr2:37349000-37375400	Strong transcription	Duodenum Mucosa	Duodenum
42	chr2:37349000-37376200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr2:37349000-37376200	Strong transcription	Fetal Brain Female	brain
44	chr2:37349200-37368600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr2:37349200-37369400	Strong transcription	A549	lung
46	chr2:37349400-37361400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr2:37349600-37361000	Weak transcription	Small Intestine	intestine
48	chr2:37349800-37363400	Weak transcription	K562	blood
49	chr2:37351800-37376000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr2:37352200-37368800	Strong transcription	Primary B cells from peripheral blood	blood

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