Variant report

Variant	rs11691232
Chromosome Location	chr2:11517669-11517670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11508308..11513224-chr2:11514143..11518077,7	MCF-7	breast:
2	chr2:11514491..11518486-chr2:11518719..11524773,5	K562	blood:
3	chr2:11516205..11518065-chr2:11518508..11520842,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10929734	0.84[EUR][1000 genomes]
rs62118900	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7581765	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11691232	ROCK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11512200-11518400	Enhancers	Fetal Intestine Small	intestine
2	chr2:11513200-11518200	Enhancers	Fetal Lung	lung
3	chr2:11514800-11518000	Weak transcription	Primary B cells from cord blood	blood
4	chr2:11514800-11519200	Enhancers	Fetal Intestine Large	intestine
5	chr2:11515000-11518400	Weak transcription	K562	blood
6	chr2:11515200-11518200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:11515200-11518200	Weak transcription	Brain Angular Gyrus	brain
8	chr2:11515200-11518400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr2:11515200-11519000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:11515400-11518000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:11515400-11518200	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:11515400-11518400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:11515400-11518600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr2:11515400-11520000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:11515400-11526000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:11515600-11518000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:11515600-11518000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:11515600-11518200	Weak transcription	Right Ventricle	heart
19	chr2:11515600-11518200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr2:11515600-11519200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:11515600-11519400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:11515600-11520000	Weak transcription	Liver	Liver
23	chr2:11515800-11517800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr2:11515800-11518200	Weak transcription	HSMM	muscle
25	chr2:11515800-11518400	Weak transcription	Osteobl	bone
26	chr2:11515800-11519200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:11515800-11519400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr2:11515800-11519400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:11515800-11519600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr2:11515800-11519600	Weak transcription	NHEK	skin
31	chr2:11515800-11520000	Weak transcription	Fetal Heart	heart
32	chr2:11516000-11518200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:11516000-11518200	Weak transcription	Brain Anterior Caudate	brain
34	chr2:11516000-11518200	Weak transcription	Right Atrium	heart
35	chr2:11516000-11518600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr2:11516000-11526000	Weak transcription	Aorta	Aorta
37	chr2:11516200-11518000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr2:11516200-11518200	Weak transcription	Adipose Nuclei	Adipose
39	chr2:11516200-11518200	Weak transcription	Colonic Mucosa	Colon
40	chr2:11516200-11518200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr2:11516200-11518200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:11516200-11518200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr2:11516200-11518200	Weak transcription	HSMMtube	muscle
44	chr2:11516200-11518600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr2:11516200-11518600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr2:11516200-11518600	Weak transcription	Small Intestine	intestine
47	chr2:11516200-11519000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr2:11516200-11519400	Weak transcription	HMEC	breast
49	chr2:11516200-11522400	Weak transcription	Hela-S3	cervix
50	chr2:11516200-11528400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links