Variant report

Variant	rs11692733
Chromosome Location	chr2:40321684-40321685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1157961	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs12151560	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12614752	0.85[ASN][1000 genomes]
rs13032715	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2066966	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs4952641	0.81[EUR][1000 genomes]
rs62148745	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6544306	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs759360	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs759361	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs759362	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs7598287	0.85[EUR][1000 genomes]
rs917977	0.85[ASN][1000 genomes]
rs985057	0.81[EUR][1000 genomes]
rs985058	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916300	chr2:40079899-40339019	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833892	chr2:40188785-40363480	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv873902	chr2:40231282-40466268	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1004092	chr2:40264608-40451701	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1000572	chr2:40271958-40458911	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv535654	chr2:40271958-40458911	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv581502	chr2:40273903-40459645	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv873903	chr2:40285145-40382712	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv873904	chr2:40292289-40466268	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40315200-40321800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:40317600-40321800	Weak transcription	Osteobl	bone
3	chr2:40320000-40322800	Enhancers	Fetal Lung	lung
4	chr2:40320000-40325600	Enhancers	HSMMtube	muscle
5	chr2:40320000-40325800	Enhancers	NHLF	lung
6	chr2:40320000-40326600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:40320000-40332200	Enhancers	HSMM	muscle
8	chr2:40320000-40332600	Enhancers	NHDF-Ad	bronchial
9	chr2:40320200-40323000	Enhancers	Dnd41	blood
10	chr2:40320200-40325000	Enhancers	Fetal Heart	heart
11	chr2:40320400-40322000	Enhancers	Adipose Nuclei	Adipose
12	chr2:40320400-40322400	Enhancers	Rectal Smooth Muscle	rectum
13	chr2:40320600-40322000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:40320600-40323800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:40320800-40322800	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr2:40321000-40321800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr2:40321000-40322000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr2:40321000-40322000	Weak transcription	Colon Smooth Muscle	Colon
19	chr2:40321000-40322000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr2:40321000-40322000	Weak transcription	NH-A	brain
21	chr2:40321000-40326000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr2:40321200-40323400	Weak transcription	Fetal Intestine Small	intestine
23	chr2:40321200-40326400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:40321200-40327600	Weak transcription	Fetal Intestine Large	intestine
25	chr2:40321200-40354600	Weak transcription	Right Ventricle	heart
26	chr2:40321400-40324200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:40321400-40327000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:40321600-40322200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:40321600-40322800	Enhancers	Fetal Brain Male	brain
30	chr2:40321600-40325200	Enhancers	NHEK	skin

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