Variant report

Variant	rs11692842
Chromosome Location	chr2:33904687-33904688
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11682747	0.84[ASN][1000 genomes]
rs1550993	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1550994	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1900776	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1900777	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1900778	0.87[EUR][1000 genomes]
rs2100183	0.81[ASN][1000 genomes]
rs72787872	0.90[ASN][1000 genomes]
rs7562167	0.85[EUR][1000 genomes]
rs7588291	0.81[ASN][1000 genomes]
rs7591164	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33903800-33905400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:33903800-33905800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:33904000-33905600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:33904000-33905800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:33904000-33906000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:33904200-33905800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:33904400-33906000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:33904400-33906000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:33904400-33906200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr2:33904600-33906200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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