Variant report

Variant	rs11695682
Chromosome Location	chr2:20389102-20389103
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20306400..20314350-chr2:20385971..20392665,10	MCF-7	breast:
2	chr2:20383626..20385611-chr2:20385923..20390219,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234378	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs868933	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012841	chr2:20328894-20415168	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1000323	chr2:20336237-20419923	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1007926	chr2:20350751-20393557	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20377400-20390000	Enhancers	Placenta	Placenta
2	chr2:20383800-20389400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:20384200-20389400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:20384200-20389600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:20384400-20389800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:20384600-20389400	Enhancers	A549	lung
7	chr2:20384600-20391800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:20384600-20392000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:20384600-20400000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr2:20384800-20389200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:20384800-20389600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:20385200-20391800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:20385800-20391000	Weak transcription	Gastric	stomach
14	chr2:20386000-20389200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr2:20386000-20391200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:20386200-20389400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:20386200-20396000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:20386200-20401400	Weak transcription	Spleen	Spleen
19	chr2:20386400-20389600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:20386400-20389600	Weak transcription	NHEK	skin
21	chr2:20386400-20391000	Weak transcription	Pancreas	Pancrea
22	chr2:20386400-20395000	Enhancers	Liver	Liver
23	chr2:20386600-20389400	Weak transcription	HMEC	breast
24	chr2:20386600-20396000	Weak transcription	Fetal Kidney	kidney
25	chr2:20386600-20401400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:20386800-20389800	Enhancers	Lung	lung
27	chr2:20387000-20389200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr2:20387000-20389600	Enhancers	H1 Cell Line	embryonic stem cell
29	chr2:20387000-20390600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr2:20387200-20391800	Enhancers	Esophagus	oesophagus
31	chr2:20387400-20389200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr2:20387400-20389600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr2:20387400-20391000	Weak transcription	Colonic Mucosa	Colon
34	chr2:20387400-20391000	Weak transcription	Fetal Intestine Large	intestine
35	chr2:20387400-20391000	Weak transcription	Fetal Intestine Small	intestine
36	chr2:20387600-20395200	Enhancers	HepG2	liver
37	chr2:20387800-20389600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr2:20388000-20389800	Enhancers	Fetal Lung	lung
39	chr2:20388200-20389200	Weak transcription	Stomach Mucosa	stomach
40	chr2:20388400-20392400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr2:20388600-20389800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr2:20388600-20400400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr2:20388800-20389400	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr2:20388800-20391200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr2:20388800-20391800	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr2:20388800-20392200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr2:20389000-20391200	Weak transcription	Fetal Muscle Leg	muscle
48	chr2:20389000-20392600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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