Variant report

Variant	rs11695762
Chromosome Location	chr2:233664060-233664061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10176930	0.88[ASN][1000 genomes]
rs10190211	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10207739	0.92[ASN][1000 genomes]
rs10209575	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10933407	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10933408	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11679581	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11684636	0.92[ASN][1000 genomes]
rs11685169	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11687379	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11688622	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11688691	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11689661	0.92[ASN][1000 genomes]
rs11694434	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12052869	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12328140	0.80[EUR][1000 genomes]
rs12328151	0.80[EUR][1000 genomes]
rs12694915	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12694916	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12988087	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13386650	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13396293	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13401578	0.98[ASN][1000 genomes]
rs13408229	0.92[ASN][1000 genomes]
rs13412034	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13412513	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13425525	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429857	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1446307	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289914	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2289915	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2293782	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2305139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28491817	0.86[EUR][1000 genomes]
rs34063802	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34832091	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35778045	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35785837	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35928329	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41266951	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56054779	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62193305	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6747479	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73005582	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7557131	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7564554	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9288675	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9288676	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9808146	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9973586	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv834570	chr2:233639160-233805067	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv460134	chr2:233639909-233714686	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv584696	chr2:233639909-233714686	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv3427756	chr2:233661496-233680721	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233642000-233667200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:233648800-233666800	Strong transcription	HSMM	muscle
3	chr2:233648800-233668000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:233649000-233680600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr2:233649200-233665800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr2:233649400-233665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:233649400-233666000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:233649400-233667600	Strong transcription	Fetal Thymus	thymus
9	chr2:233649600-233666800	Strong transcription	HepG2	liver
10	chr2:233649800-233666400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr2:233649800-233667000	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr2:233650800-233664200	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr2:233651200-233664600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr2:233651200-233668000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr2:233651400-233665600	Strong transcription	Primary hematopoietic stem cells	blood
16	chr2:233651400-233668000	Strong transcription	Liver	Liver
17	chr2:233651800-233664200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr2:233651800-233665600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:233651800-233666000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:233651800-233668000	Strong transcription	Dnd41	blood
21	chr2:233652000-233664600	Strong transcription	Adipose Nuclei	Adipose
22	chr2:233652200-233666400	Strong transcription	Primary T cells from cord blood	blood
23	chr2:233652400-233666600	Strong transcription	Primary B cells from cord blood	blood
24	chr2:233654400-233666200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:233655600-233689200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr2:233656600-233671200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr2:233656800-233674000	Weak transcription	Fetal Heart	heart
28	chr2:233657400-233665400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr2:233657600-233665400	Weak transcription	Esophagus	oesophagus
30	chr2:233657800-233665400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:233658000-233671200	Weak transcription	NHLF	lung
32	chr2:233658400-233664400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr2:233658400-233665400	Weak transcription	Lung	lung
34	chr2:233658400-233671200	Weak transcription	Gastric	stomach
35	chr2:233658800-233665200	Strong transcription	HMEC	breast
36	chr2:233658800-233671200	Weak transcription	Small Intestine	intestine
37	chr2:233659000-233671200	Weak transcription	Fetal Brain Male	brain
38	chr2:233659600-233666400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr2:233659600-233671200	Weak transcription	Pancreas	Pancrea
40	chr2:233659600-233671600	Weak transcription	Spleen	Spleen
41	chr2:233659800-233671200	Weak transcription	Brain Substantia Nigra	brain
42	chr2:233659800-233672400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr2:233660400-233666400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr2:233660800-233688600	Weak transcription	Psoas Muscle	Psoas
45	chr2:233661000-233664400	Weak transcription	HUVEC	blood vessel
46	chr2:233661000-233665400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr2:233661000-233670200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr2:233661200-233671000	Weak transcription	NHDF-Ad	bronchial
49	chr2:233661200-233671200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr2:233661400-233665200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links