Variant report

Variant	rs11698157
Chromosome Location	chr20:52841619-52841620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1382007	0.86[ASN][1000 genomes]
rs292112	0.96[ASN][1000 genomes]
rs292116	0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs292117	0.92[JPT][hapmap]
rs3787559	1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4811496	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6013926	0.91[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs6013927	0.88[ASN][1000 genomes]
rs6023079	0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs6127146	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73137406	0.84[ASN][1000 genomes]
rs73137452	0.81[EUR][1000 genomes]
rs986709	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52829400-52847400	Weak transcription	Aorta	Aorta
2	chr20:52829600-52847600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:52831400-52842200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr20:52833000-52845400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:52834200-52843600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr20:52834600-52843600	Weak transcription	GM12878-XiMat	blood
7	chr20:52834600-52845200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr20:52834600-52845200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr20:52834600-52845200	Weak transcription	NHEK	skin
10	chr20:52835600-52845800	Weak transcription	HSMM	muscle
11	chr20:52835600-52846000	Weak transcription	HSMMtube	muscle
12	chr20:52837400-52842200	Weak transcription	Dnd41	blood
13	chr20:52838600-52846000	Weak transcription	Fetal Muscle Leg	muscle
14	chr20:52839200-52842200	Weak transcription	HepG2	liver
15	chr20:52839200-52843800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr20:52839600-52845400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr20:52840600-52849000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr20:52840800-52849000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr20:52841000-52851000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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