Variant report

Variant	rs11698972
Chromosome Location	chr20:11146948-11146949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13036917	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13043918	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13044954	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2327339	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4813962	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6074259	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6074260	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6078084	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6078088	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6078089	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6078090	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6078091	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6078093	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11140200-11148800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr20:11140800-11148600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:11141200-11148400	Weak transcription	HSMMtube	muscle
4	chr20:11141400-11151000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:11144200-11148600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr20:11146200-11147800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr20:11146600-11147400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr20:11146600-11150800	Weak transcription	Fetal Kidney	kidney
9	chr20:11146600-11151200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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