Variant report

Variant	rs116990189
Chromosome Location	chr7:22395425-22395426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3437848	chr7:22395252-22397800	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22384200-22395800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:22392400-22396200	Transcr. at gene 5' and 3'	Dnd41	blood
3	chr7:22393800-22397000	Active TSS	Brain Anterior Caudate	brain
4	chr7:22394000-22395800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr7:22394200-22397000	Active TSS	Brain Angular Gyrus	brain
6	chr7:22394400-22397600	Active TSS	Duodenum Mucosa	Duodenum
7	chr7:22394800-22397000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:22395000-22395600	Flanking Active TSS	Fetal Intestine Small	intestine
9	chr7:22395000-22396000	Flanking Active TSS	Fetal Thymus	thymus
10	chr7:22395000-22396200	Flanking Active TSS	Liver	Liver
11	chr7:22395000-22396200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
12	chr7:22395000-22397000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:22395000-22397000	Active TSS	Esophagus	oesophagus
14	chr7:22395000-22397000	Active TSS	Fetal Intestine Large	intestine
15	chr7:22395000-22397000	Active TSS	GM12878-XiMat	blood
16	chr7:22395000-22397200	Active TSS	Sigmoid Colon	Sigmoid Colon
17	chr7:22395000-22397600	Active TSS	Brain Cingulate Gyrus	brain
18	chr7:22395200-22395600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
19	chr7:22395200-22395600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr7:22395200-22395600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr7:22395200-22395600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr7:22395200-22395600	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
23	chr7:22395200-22395800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:22395200-22395800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:22395200-22395800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:22395200-22395800	Bivalent Enhancer	Fetal Lung	lung
27	chr7:22395200-22396000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
28	chr7:22395200-22396000	Bivalent/Poised TSS	Adipose Nuclei	Adipose
29	chr7:22395200-22396200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:22395200-22396200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:22395200-22396200	Bivalent Enhancer	Fetal Brain Male	brain
32	chr7:22395200-22396200	Active TSS	Fetal Kidney	kidney
33	chr7:22395200-22396200	Flanking Active TSS	HMEC	breast
34	chr7:22395200-22396200	Flanking Active TSS	NHEK	skin
35	chr7:22395200-22396400	Active TSS	Right Ventricle	heart
36	chr7:22395200-22396800	Bivalent/Poised TSS	Small Intestine	intestine
37	chr7:22395200-22397000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
38	chr7:22395200-22397000	Active TSS	Colonic Mucosa	Colon
39	chr7:22395200-22397000	Active TSS	Lung	lung
40	chr7:22395400-22395600	Enhancers	Placenta Amnion	Placenta Amnion
41	chr7:22395400-22395800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
42	chr7:22395400-22395800	Weak transcription	Gastric	stomach
43	chr7:22395400-22396000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
44	chr7:22395400-22396000	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr7:22395400-22396000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
46	chr7:22395400-22396200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
47	chr7:22395400-22396200	Flanking Active TSS	Primary B cells from cord blood	blood
48	chr7:22395400-22396400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
49	chr7:22395400-22396400	Bivalent/Poised TSS	Fetal Stomach	stomach
50	chr7:22395400-22397000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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