Variant report

Variant	rs11700168
Chromosome Location	chr20:23250927-23250928
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1110402	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11697315	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2185871	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2405001	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34877072	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35327803	1.00[ASN][1000 genomes]
rs4815183	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4815186	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4815188	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6048657	0.89[ASN][1000 genomes]
rs6048658	0.89[ASN][1000 genomes]
rs6048661	0.90[AFR][1000 genomes]
rs6083070	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv458948	chr20:23234699-23292849	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv585721	chr20:23234699-23292849	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23249600-23251000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr20:23250000-23251800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr20:23250200-23251000	Enhancers	Placenta	Placenta
4	chr20:23250200-23251400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:23250200-23251400	Enhancers	Adipose Nuclei	Adipose
6	chr20:23250200-23251400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr20:23250200-23251600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr20:23250200-23251800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr20:23250200-23251800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr20:23250200-23251800	Enhancers	HUVEC	blood vessel
11	chr20:23250200-23251800	Enhancers	Osteobl	bone
12	chr20:23250200-23252000	Enhancers	NH-A	brain
13	chr20:23250400-23251000	Enhancers	Fetal Muscle Trunk	muscle
14	chr20:23250400-23251200	Enhancers	NHLF	lung
15	chr20:23250400-23251400	Enhancers	Aorta	Aorta
16	chr20:23250400-23251400	Enhancers	Fetal Lung	lung
17	chr20:23250400-23251400	Enhancers	Right Atrium	heart
18	chr20:23250400-23251600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr20:23250400-23251600	Enhancers	Fetal Muscle Leg	muscle
20	chr20:23250400-23251600	Enhancers	Left Ventricle	heart
21	chr20:23250600-23251200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr20:23250600-23251200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr20:23250600-23251200	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr20:23250600-23251400	Flanking Active TSS	HepG2	liver
25	chr20:23250600-23251800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr20:23250800-23251200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr20:23250800-23251200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr20:23250800-23251400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr20:23250800-23251400	Enhancers	Fetal Stomach	stomach
30	chr20:23250800-23251600	Enhancers	Fetal Heart	heart
31	chr20:23250800-23251800	Enhancers	HUES64 Cell Line	embryonic stem cell

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