Variant report

Variant	rs11701228
Chromosome Location	chr21:39977562-39977563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11702164	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11702226	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11702833	1.00[JPT][hapmap]
rs11702876	0.89[ASN][1000 genomes]
rs2836555	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836565	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73217979	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73217981	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73217983	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73217985	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11701228	C21orf88	cis	lesional skin	skin_eQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39973000-39982000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr21:39975400-39977600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr21:39976400-39977800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr21:39976600-39977600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr21:39976600-39977800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr21:39976600-39977800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr21:39976600-39977800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr21:39976600-39978000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr21:39976800-39977800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr21:39977000-39977800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr21:39977200-39977600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr21:39977200-39977600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr21:39977200-39977600	Active TSS	Aorta	Aorta
14	chr21:39977200-39977600	Enhancers	Fetal Brain Male	brain
15	chr21:39977200-39978000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr21:39977400-39977800	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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