Variant report

Variant	rs117035243
Chromosome Location	chr16:80837120-80837121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80836267..80838116-chr16:81067816..81069508,2	MCF-7	breast:
2	chr16:80744840..80746889-chr16:80835828..80837978,2	MCF-7	breast:
3	chr16:80573487..80575142-chr16:80836688..80838672,2	MCF-7	breast:
4	chr16:80653224..80655610-chr16:80835327..80837663,2	MCF-7	breast:
5	chr16:80745711..80747675-chr16:80834808..80837555,2	MCF-7	breast:
6	chr16:80836730..80839628-chr16:80867393..80871297,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260896	Chromatin interaction
ENSG00000259867	Chromatin interaction
ENSG00000168589	Chromatin interaction
ENSG00000166454	Chromatin interaction
ENSG00000260213	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv3451298	chr16:80696935-80997389	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv3350075	chr16:80696955-80997359	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv542990	chr16:80729797-80918198	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv833301	chr16:80732170-80928751	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv457560	chr16:80825206-80858143	Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
8	nsv573302	chr16:80825206-80858143	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
9	esv3376994	chr16:80836476-80839824	Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
10	esv3439821	chr16:80836901-80839624	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	esv3420456	chr16:80837001-80839399	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80822600-80837200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:80832400-80838800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr16:80836000-80837200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr16:80836400-80837200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:80836400-80837200	Enhancers	Gastric	stomach
6	chr16:80836400-80837600	Enhancers	Esophagus	oesophagus
7	chr16:80836400-80838200	Active TSS	Brain Angular Gyrus	brain
8	chr16:80836600-80837200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr16:80836600-80837400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr16:80836600-80837400	Flanking Active TSS	HUVEC	blood vessel
11	chr16:80836600-80839000	Active TSS	HSMM	muscle
12	chr16:80836800-80837200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr16:80836800-80837200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr16:80836800-80837200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
15	chr16:80836800-80837200	Weak transcription	Fetal Intestine Small	intestine
16	chr16:80836800-80837200	Enhancers	Pancreas	Pancrea
17	chr16:80836800-80837200	Enhancers	Small Intestine	intestine
18	chr16:80836800-80837400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr16:80836800-80838600	Active TSS	Primary hematopoietic stem cells	blood
20	chr16:80836800-80838600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr16:80836800-80838800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr16:80836800-80838800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr16:80836800-80838800	Active TSS	NH-A	brain
24	chr16:80836800-80838800	Active TSS	NHEK	skin
25	chr16:80836800-80839000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr16:80836800-80839000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
27	chr16:80837000-80837200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr16:80837000-80837200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
29	chr16:80837000-80837200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr16:80837000-80837200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr16:80837000-80837200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
32	chr16:80837000-80837200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
33	chr16:80837000-80837200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
34	chr16:80837000-80837200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr16:80837000-80837200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
36	chr16:80837000-80837200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr16:80837000-80837200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr16:80837000-80837200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr16:80837000-80837200	Enhancers	Liver	Liver
40	chr16:80837000-80837200	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
41	chr16:80837000-80837200	Bivalent Enhancer	Brain Hippocampus Middle	brain
42	chr16:80837000-80837200	Bivalent/Poised TSS	Fetal Brain Female	brain
43	chr16:80837000-80837200	Flanking Active TSS	Placenta	Placenta
44	chr16:80837000-80837200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
45	chr16:80837000-80837200	Enhancers	Spleen	Spleen
46	chr16:80837000-80837200	Flanking Active TSS	Hela-S3	cervix
47	chr16:80837000-80837200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
48	chr16:80837000-80837400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr16:80837000-80837400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
50	chr16:80837000-80837400	Flanking Active TSS	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links