Variant report

Variant	rs11706576
Chromosome Location	chr3:139108716-139108717
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:370)
CpG islands
(count:122)
Chromatin interactive
region (count:10)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:370 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:139107832-139109205	K562	blood:	n/a	n/a
2	POLR2A	chr3:139107752-139109103	GM12892	blood:	n/a	n/a
3	NFYB	chr3:139108305-139108716	GM12878	blood:	n/a	n/a
4	TAF1	chr3:139108088-139109013	A549	lung:	n/a	n/a
5	POLR2A	chr3:139108138-139109232	U87	brain:	n/a	n/a
6	POLR2A	chr3:139107893-139109541	HepG2	liver:	n/a	n/a
7	POLR2A	chr3:139107770-139109252	GM12891	blood:	n/a	n/a
8	BRCA1	chr3:139108310-139108753	H1-hESC	embryonic stem cell:	n/a	chr3:139108510-139108519
9	TBP	chr3:139108042-139109426	H1-hESC	embryonic stem cell:	n/a	n/a
10	YY1	chr3:139108292-139108983	GM12878	blood:	n/a	chr3:139108541-139108555
11	POLR2A	chr3:139108072-139109168	U87	brain:	n/a	n/a
12	SIN3AK20	chr3:139107868-139109410	MCF-7	breast:	n/a	n/a
13	TAF1	chr3:139108068-139109044	SK-N-SH	brain:	n/a	n/a
14	SIN3A	chr3:139107715-139109213	H1-hESC	embryonic stem cell:	n/a	n/a
15	YY1	chr3:139108292-139108964	SK-N-SH_RA	brain:	n/a	chr3:139108541-139108555
16	CREB1	chr3:139108201-139109105	GM12878	blood:	n/a	n/a
17	ELF1	chr3:139108244-139108770	A549	lung:	n/a	chr3:139108494-139108503 chr3:139108492-139108505 chr3:139108275-139108287 chr3:139108269-139108281 chr3:139108276-139108288 chr3:139108493-139108504
18	POLR2A	chr3:139108137-139109211	ProgFib	skin:	n/a	n/a
19	ZBTB33	chr3:139108286-139108725	HepG2	liver:	n/a	chr3:139108508-139108523 chr3:139108510-139108519
20	TBP	chr3:139107818-139109486	K562	blood:	n/a	n/a
21	POLR2A	chr3:139107761-139109234	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr3:139108280-139108899	A549	lung:	n/a	n/a
23	MAX	chr3:139108129-139109312	MCF-7	breast:	n/a	n/a
24	POLR2A	chr3:139108183-139108930	GM12892	blood:	n/a	n/a
25	SP1	chr3:139108320-139108864	H1-hESC	embryonic stem cell:	n/a	chr3:139108578-139108587 chr3:139108577-139108589 chr3:139108578-139108588 chr3:139108577-139108588 chr3:139108577-139108589 chr3:139108578-139108587 chr3:139108579-139108588
26	POLR2A	chr3:139108158-139109193	HCT-116	colon:	n/a	n/a
27	CHD2	chr3:139107977-139109100	GM12878	blood:	n/a	chr3:139108510-139108519
28	MAX	chr3:139108214-139109155	MCF-7	breast:	n/a	n/a
29	TAF1	chr3:139108130-139109130	HepG2	liver:	n/a	n/a
30	ZNF143	chr3:139108198-139109179	K562	blood:	n/a	n/a
31	CHD2	chr3:139107887-139108982	K562	blood:	n/a	chr3:139108510-139108519
32	HCFC1	chr3:139107950-139109314	K562	blood:	n/a	n/a
33	MAX	chr3:139108659-139109058	K562	blood:	n/a	n/a
34	POLR2A	chr3:139108598-139108921	SK-N-SH	brain:	n/a	n/a
35	TBL1XR1	chr3:139107891-139108989	GM12878	blood:	n/a	n/a
36	CEBPD	chr3:139108209-139108938	HepG2	liver:	n/a	n/a
37	PML	chr3:139108231-139108923	MCF-7	breast:	n/a	n/a
38	POLR2A	chr3:139108111-139108968	GM12878	blood:	n/a	n/a
39	EP300	chr3:139108262-139109214	HepG2	liver:	n/a	chr3:139108494-139108501 chr3:139108276-139108285
40	TCF7L2	chr3:139108288-139109138	PANC-1	pancreas:	n/a	n/a
41	CBX3	chr3:139108254-139109081	K562	blood:	n/a	n/a
42	POLR2A	chr3:139108281-139108952	HepG2	liver:	n/a	n/a
43	POLR2A	chr3:139107934-139109186	GM12891	blood:	n/a	n/a
44	TCF12	chr3:139108165-139108892	ECC-1	luminal epithelium:	n/a	n/a
45	TAF1	chr3:139108186-139109062	GM12878	blood:	n/a	n/a
46	RFX5	chr3:139108057-139109314	Hela-S3	cervix:	n/a	chr3:139108588-139108603 chr3:139108588-139108603 chr3:139108589-139108603 chr3:139108588-139108603
47	MXI1	chr3:139107795-139109201	Hela-S3	cervix:	n/a	chr3:139108587-139108602 chr3:139108589-139108604
48	POLR2A	chr3:139107819-139109118	PBDE	blood:	n/a	n/a
49	TAF7	chr3:139108174-139108979	H1-hESC	embryonic stem cell:	n/a	n/a
50	SP1	chr3:139108266-139108857	A549	lung:	n/a	chr3:139108578-139108587 chr3:139108577-139108589 chr3:139108578-139108588 chr3:139108577-139108588 chr3:139108577-139108589 chr3:139108578-139108587 chr3:139108579-139108588

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:139108681-139108731	HRE	kidney:	n/a
2	chr3:139108681-139108731	SK-N-SH	brain:	n/a
3	chr3:139108705-139108755	HRCEpiC	kidney:	n/a
4	chr3:139108681-139108731	HEEpiC	esophagus:	n/a
5	chr3:139108681-139108731	AG10803	skin:	n/a
6	chr3:139108681-139108731	AG04449	skin:	fetal
7	chr3:139108705-139108755	A549	lung:	n/a
8	chr3:139108681-139108731	IMR90	lung:	fetal
9	chr3:139108681-139108731	ECC-1	luminal epithelium:	n/a
10	chr3:139108705-139108755	PANC-1	pancreas:	n/a
11	chr3:139108705-139108755	AG10803	skin:	n/a
12	chr3:139108681-139108731	T-47D	breast:	n/a
13	chr3:139108681-139108731	HNPCEpiC	eye:	n/a
14	chr3:139108705-139108755	PrEC	prostate:	n/a
15	chr3:139108705-139108755	HCT-116	colon:	n/a
16	chr3:139108681-139108731	NT2-D1	testis:	n/a
17	chr3:139108705-139108755	LNCaP	prostate:	n/a
18	chr3:139108705-139108755	Hepatocyte	liver:	n/a
19	chr3:139108705-139108755	NHBE	bronchial:	n/a
20	chr3:139108681-139108731	HAEpiC	amniotic membrane:	n/a
21	chr3:139108681-139108731	HRPEpiC	eye:	n/a
22	chr3:139108681-139108731	Jurkat	blood:	n/a
23	chr3:139108705-139108755	HMEC	breast:	n/a
24	chr3:139108681-139108731	MCF10A-Er-Src	breast:	n/a
25	chr3:139108705-139108755	SK-N-MC	brain:	n/a
26	chr3:139108705-139108755	HRPEpiC	eye:	n/a
27	chr3:139108681-139108731	K562	blood:	n/a
28	chr3:139108681-139108731	AG09309	skin:	n/a
29	chr3:139108681-139108731	BE2_C	brain:	n/a
30	chr3:139108681-139108731	HCF	heart:	n/a
31	chr3:139108681-139108731	U87	brain:	n/a
32	chr3:139108681-139108731	PFSK-1	brain:	n/a
33	chr3:139108705-139108755	HEK293	kidney:	embryo
34	chr3:139108681-139108731	AG04450	lung:	fetal
35	chr3:139108705-139108755	H1-hESC	embryonic stem cell:	embryo
36	chr3:139108705-139108755	AG09309	skin:	n/a
37	chr3:139108705-139108755	NH-A	brain:	n/a
38	chr3:139108705-139108755	NB4	blood:	n/a
39	chr3:139108705-139108755	HepG2	liver:	n/a
40	chr3:139108705-139108755	AG04450	lung:	fetal
41	chr3:139108705-139108755	BE2_C	brain:	n/a
42	chr3:139108705-139108755	SAEC	small airway:	n/a
43	chr3:139108705-139108755	GM12891	blood:	n/a
44	chr3:139108705-139108755	MCF-7	breast:	n/a
45	chr3:139108705-139108755	AoSMC	blood vessel:	n/a
46	chr3:139108705-139108755	ECC-1	luminal epithelium:	n/a
47	chr3:139108681-139108731	CMK	blood:	n/a
48	chr3:139108705-139108755	HCM	heart:	n/a
49	chr3:139108681-139108731	HUVEC	blood vessel:	n/a
50	chr3:139108681-139108731	AoSMC	blood vessel:	n/a

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:139107928..139108761-chr6:26216410..26217328,2	Hela-S3	cervix:
2	chr3:139108349..139110080-chr3:140659758..140661262,2	MCF-7	breast:
3	chr3:139066912..139069879-chr3:139106229..139109511,3	K562	blood:
4	chr11:67210699..67211404-chr3:139108261..139109180,2	Hela-S3	cervix:
5	chr1:28974567..28975425-chr3:139108055..139109088,3	Hela-S3	cervix:
6	chr3:139062965..139064621-chr3:139106496..139109082,2	MCF-7	breast:
7	chr3:139062813..139064566-chr3:139107029..139109039,2	MCF-7	breast:
8	chr3:139061660..139066893-chr3:139105523..139110764,11	K562	blood:
9	chr3:139088868..139091914-chr3:139107086..139109851,3	K562	blood:
10	chr3:139063205..139066777-chr3:139105523..139110764,7	K562	blood:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MRPS22-1	chr3:139108682-139108775	ENSG00000248932.1
2	lnc-MRPS22-1	chr3:139108641-139108775	NONHSAT092358
3	lnc-MRPS22-1	chr3:139108674-139109089	NONHSAT092364
4	lnc-MRPS22-1	chr3:139108641-139108775	NONHSAT092359
5	lnc-MRPS22-1	chr3:139108660-139109079	ENSG00000248932.1
6	lnc-MRPS22-1	chr3:139108657-139109089	ENSG00000248932.1
7	lnc-MRPS22-1	chr3:139108680-139108775	ENSG00000248932.1
8	lnc-MRPS22-1	chr3:139108672-139108775	ENSG00000248932.1
9	lnc-MRPS22-1	chr3:139108641-139108775	NONHSAT092360

No data

Variant related genes	Relation type
COPB2	TF binding region
ENSG00000248932	TF binding region
ENSG00000248932	CpG island
COPB2	CpG island
ENSG00000184432	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000270103	Chromatin interaction
ENSG00000114120	Chromatin interaction
ENSG00000175110	Chromatin interaction
ENSG00000172725	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000272656	Chromatin interaction

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs1017469	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10935321	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10935322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935326	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10935328	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11712911	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11717119	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721246	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11920890	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12495890	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064670	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13313904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13316469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13326837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13327001	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13327467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13434189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371338	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371339	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550352	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1583743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1586862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1609483	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17395255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17395262	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17395304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs176984	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1817830	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1817831	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs188422	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs192687	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs211582	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs211585	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2118980	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289347	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289349	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349058	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28771131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28780368	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28829348	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28861812	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs295472	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs295480	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs295483	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs295486	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs295488	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs34680708	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3555	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35674260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3772881	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs387987	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3888890	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4302343	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4428138	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs444264	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4547659	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4563370	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4683608	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894411	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61659722	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62270789	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62270792	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62270814	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62270815	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62270816	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6439858	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6439861	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778992	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782957	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6801875	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6804877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7372124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7372551	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7372811	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7372813	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7373116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7373657	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7374065	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7374317	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7374348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7433335	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7612112	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7616025	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7626658	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627718	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7645307	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs878535	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9289574	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289579	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs964226	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs978835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812991	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9813503	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9817963	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9819368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9821875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9821891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824837	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9828954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9831144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9839681	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9848820	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9848959	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9849255	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9850987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9851318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9857390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9868900	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869745	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872749	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9873011	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9874227	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9876640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9879594	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881973	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9990108	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv949635	chr3:139091219-139367043	Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139106400-139109400	Active TSS	Stomach Smooth Muscle	stomach
2	chr3:139106400-139109600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:139106400-139109800	Active TSS	HSMMtube	muscle
4	chr3:139106600-139109600	Active TSS	NHLF	lung
5	chr3:139106600-139110400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr3:139106800-139109400	Active TSS	Aorta	Aorta
7	chr3:139106800-139109600	Active TSS	Right Ventricle	heart
8	chr3:139106800-139109600	Active TSS	NHDF-Ad	bronchial
9	chr3:139106800-139109800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:139106800-139109800	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr3:139106800-139110000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr3:139107000-139109200	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr3:139107000-139109600	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr3:139107000-139109600	Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr3:139107000-139109600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:139107000-139109600	Active TSS	Fetal Kidney	kidney
17	chr3:139107000-139109600	Active TSS	HSMM	muscle
18	chr3:139107000-139109600	Active TSS	Osteobl	bone
19	chr3:139107000-139109800	Active TSS	H1 Cell Line	embryonic stem cell
20	chr3:139107000-139109800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:139107000-139110200	Active TSS	A549	lung
22	chr3:139107200-139109000	Active TSS	Fetal Intestine Small	intestine
23	chr3:139107200-139109200	Active TSS	Duodenum Mucosa	Duodenum
24	chr3:139107200-139109200	Active TSS	Thymus	Thymus
25	chr3:139107200-139109400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:139107200-139109400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:139107200-139109400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:139107200-139109400	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr3:139107200-139109400	Active TSS	Fetal Lung	lung
30	chr3:139107200-139109400	Active TSS	Fetal Muscle Leg	muscle
31	chr3:139107200-139109400	Active TSS	Ovary	ovary
32	chr3:139107200-139109600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:139107200-139109600	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr3:139107200-139109600	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr3:139107200-139109600	Active TSS	Muscle Satellite Cultured Cells	--
36	chr3:139107200-139109600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:139107200-139109600	Active TSS	Fetal Intestine Large	intestine
38	chr3:139107200-139109600	Active TSS	Fetal Stomach	stomach
39	chr3:139107200-139109600	Active TSS	Pancreas	Pancrea
40	chr3:139107200-139109600	Active TSS	Rectal Smooth Muscle	rectum
41	chr3:139107200-139109600	Active TSS	K562	blood
42	chr3:139107200-139109800	Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr3:139107200-139109800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:139107200-139109800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:139107200-139109800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:139107200-139109800	Active TSS	Psoas Muscle	Psoas
47	chr3:139107200-139109800	Active TSS	Right Atrium	heart
48	chr3:139107200-139109800	Active TSS	GM12878-XiMat	blood
49	chr3:139107200-139109800	Active TSS	Hela-S3	cervix
50	chr3:139107200-139109800	Active TSS	HMEC	breast

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