Variant report

Variant	rs11706766
Chromosome Location	chr3:121088873-121088874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1108170	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1191289	0.80[EUR][1000 genomes]
rs1191292	0.81[EUR][1000 genomes]
rs1191294	0.82[EUR][1000 genomes]
rs1191298	0.82[EUR][1000 genomes]
rs12494335	0.81[AFR][1000 genomes]
rs13074440	0.82[AFR][1000 genomes]
rs13086811	0.83[AFR][1000 genomes]
rs1546347	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs170939	0.82[EUR][1000 genomes]
rs1795384	0.83[EUR][1000 genomes]
rs191438	0.82[EUR][1000 genomes]
rs1986730	0.82[AFR][1000 genomes]
rs1987097	0.84[AFR][1000 genomes]
rs2169300	0.85[AFR][1000 genomes]
rs2175453	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2331710	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs234996	0.82[EUR][1000 genomes]
rs338957	0.82[EUR][1000 genomes]
rs338970	0.82[EUR][1000 genomes]
rs338971	0.82[EUR][1000 genomes]
rs338974	0.82[EUR][1000 genomes]
rs338975	0.82[EUR][1000 genomes]
rs338978	0.82[EUR][1000 genomes]
rs338980	0.82[EUR][1000 genomes]
rs338984	0.82[EUR][1000 genomes]
rs338987	0.83[EUR][1000 genomes]
rs338988	0.83[EUR][1000 genomes]
rs338989	0.83[EUR][1000 genomes]
rs338990	0.83[EUR][1000 genomes]
rs338993	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs338995	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs338998	0.82[EUR][1000 genomes]
rs339002	0.84[EUR][1000 genomes]
rs339004	0.83[EUR][1000 genomes]
rs339007	0.83[EUR][1000 genomes]
rs339008	0.83[EUR][1000 genomes]
rs339009	0.83[EUR][1000 genomes]
rs4080279	0.89[AFR][1000 genomes]
rs6438621	0.80[AFR][1000 genomes]
rs6438625	0.86[AFR][1000 genomes]
rs6781737	0.81[EUR][1000 genomes]
rs6787064	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6793427	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6800080	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7621325	0.80[EUR][1000 genomes]
rs7636533	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7644928	0.86[AFR][1000 genomes]
rs9332451	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005275	chr3:120700604-121102735	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1008441	chr3:120730017-121102735	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv536709	chr3:120730017-121102735	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv829701	chr3:120935402-121115932	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv521397	chr3:120970900-121192350	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv829702	chr3:121045793-121227975	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv591398	chr3:121046468-121154193	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv591399	chr3:121046468-121160369	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv591400	chr3:121070299-121339354	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121088000-121092200	Weak transcription	Ovary	ovary
2	chr3:121088200-121099000	Weak transcription	Brain Inferior Temporal Lobe	brain

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