Variant report

Variant	rs117068379
Chromosome Location	chr16:70537440-70537441
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:70536505..70539456-chr16:70548133..70550767,2	MCF-7	breast:
2	chr16:70536864..70540404-chr16:70556076..70558403,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189091	Chromatin interaction
ENSG00000103051	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	esv2830027	chr16:70473934-70558039	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv3330254	chr16:70536801-70538799	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2047908	chr16:70537300-70537988	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3312966	chr16:70537390-70537878	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3499956	chr16:70537397-70537904	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3499954	chr16:70537406-70537876	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3499955	chr16:70537415-70537833	Strong transcription Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3312964	chr16:70537425-70537866	Strong transcription Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3499950	chr16:70537427-70537848	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3312962	chr16:70537430-70537865	Strong transcription Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3312965	chr16:70537434-70537824	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70489400-70556400	Weak transcription	Stomach Mucosa	stomach
2	chr16:70512800-70556400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:70517600-70538800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr16:70518000-70545800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:70523200-70542400	Weak transcription	Hela-S3	cervix
6	chr16:70524400-70542400	Weak transcription	Fetal Brain Male	brain
7	chr16:70525600-70538200	Strong transcription	Fetal Thymus	thymus
8	chr16:70526000-70539000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr16:70528000-70553800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr16:70528800-70556400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr16:70530000-70541200	Weak transcription	Fetal Heart	heart
12	chr16:70530600-70542400	Weak transcription	HMEC	breast
13	chr16:70530600-70545800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr16:70530800-70542200	Weak transcription	K562	blood
15	chr16:70531000-70541200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr16:70531000-70542400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr16:70531000-70542800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr16:70531200-70542200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr16:70531400-70543600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr16:70531600-70542000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr16:70531600-70542800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr16:70531800-70540800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr16:70531800-70542400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr16:70531800-70542400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr16:70532000-70540000	Weak transcription	Pancreas	Pancrea
26	chr16:70532000-70540600	Weak transcription	Psoas Muscle	Psoas
27	chr16:70532000-70540800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr16:70532000-70540800	Weak transcription	Esophagus	oesophagus
29	chr16:70532000-70541000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr16:70532000-70541000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr16:70532000-70541000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr16:70532000-70541000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr16:70532000-70541200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr16:70532000-70542200	Weak transcription	HSMMtube	muscle
35	chr16:70532000-70542200	Weak transcription	HUVEC	blood vessel
36	chr16:70532000-70542200	Weak transcription	NHDF-Ad	bronchial
37	chr16:70532000-70542400	Weak transcription	Primary B cells from cord blood	blood
38	chr16:70532000-70542400	Weak transcription	Aorta	Aorta
39	chr16:70532000-70542400	Weak transcription	Fetal Lung	lung
40	chr16:70532000-70542800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr16:70532000-70543000	Weak transcription	Colonic Mucosa	Colon
42	chr16:70532000-70543000	Weak transcription	Small Intestine	intestine
43	chr16:70532000-70545600	Weak transcription	A549	lung
44	chr16:70532200-70540800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr16:70532600-70542200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr16:70533000-70538600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr16:70533000-70540600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr16:70533000-70540600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr16:70533000-70540800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr16:70533000-70541000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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