Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25402908..25405265-chr3:25407637..25410309,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11709623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11709732	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11714481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11716065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11717848	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11718046	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11718836	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11720675	0.93[EUR][1000 genomes]
rs11721271	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17016260	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17588596	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2164476	0.82[JPT][hapmap]
rs34075235	0.81[ASN][1000 genomes]
rs57697446	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6550962	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6550963	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6550966	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7615094	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7623030	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7649070	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25407600-25410200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:25408600-25408800	Enhancers	Fetal Intestine Small	intestine
3	chr3:25408600-25412000	Weak transcription	Fetal Intestine Large	intestine

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