Variant report

Variant	rs11707204
Chromosome Location	chr3:134629174-134629175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10512935	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11709198	0.89[CHB][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11719058	0.82[JPT][hapmap]
rs17707511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28550833	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73224316	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73224317	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9843661	0.83[CEU][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv460859	chr3:134626339-134645710	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134624400-134629400	Weak transcription	Brain Anterior Caudate	brain
2	chr3:134624400-134630000	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:134624600-134629400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:134624600-134629800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:134624600-134634200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:134624800-134629800	Weak transcription	Fetal Brain Female	brain
7	chr3:134624800-134631800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:134626200-134631000	Weak transcription	GM12878-XiMat	blood
9	chr3:134627600-134630000	Weak transcription	Brain Germinal Matrix	brain
10	chr3:134627600-134630000	Weak transcription	Fetal Brain Male	brain
11	chr3:134628000-134630600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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