Variant report

Variant	rs11707276
Chromosome Location	chr3:52156588-52156589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:52156079..52157871-chr3:52174113..52176028,2	K562	blood:
2	chr3:52037989..52040956-chr3:52156220..52158578,2	K562	blood:
3	chr3:52088173..52093684-chr3:52155209..52159417,7	MCF-7	breast:
4	chr3:52035096..52036069-chr3:52156583..52157793,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164086	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4687604	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520211	chr3:51772347-52166147	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv519445	chr3:52004317-52367932	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
3	nsv876786	chr3:52041566-52236762	Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv984541	chr3:52055970-52285682	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv470572	chr3:52123313-52350212	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	103 gene(s)	inside rSNPs	diseases
6	nsv460537	chr3:52148233-52290550	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	nsv590301	chr3:52148233-52290550	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv508218	chr3:52155869-52290410	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52110600-52179400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:52124200-52157200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:52126200-52160600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:52128600-52157000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:52133200-52162000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:52136800-52187200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:52140400-52178200	Strong transcription	Dnd41	blood
8	chr3:52140600-52160800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:52144200-52163600	Weak transcription	Aorta	Aorta
10	chr3:52146200-52162200	Weak transcription	Gastric	stomach
11	chr3:52148600-52179800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:52149400-52156600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:52151000-52161000	Strong transcription	Thymus	Thymus
14	chr3:52151200-52157400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr3:52151200-52157600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr3:52151600-52160000	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr3:52152200-52164400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:52152400-52157600	Genic enhancers	Fetal Muscle Trunk	muscle
19	chr3:52152400-52160800	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:52152800-52156600	Weak transcription	Fetal Heart	heart
21	chr3:52152800-52158000	Weak transcription	Fetal Brain Male	brain
22	chr3:52152800-52159000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:52152800-52160800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:52153000-52157000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:52153200-52157400	Enhancers	Placenta	Placenta
26	chr3:52153200-52158200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:52153200-52161200	Strong transcription	H9 Cell Line	embryonic stem cell
28	chr3:52153200-52161200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:52153400-52157600	Enhancers	Adipose Nuclei	Adipose
30	chr3:52153400-52158600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:52153400-52159800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:52153600-52157600	Genic enhancers	Fetal Muscle Leg	muscle
33	chr3:52153600-52158000	Enhancers	Colon Smooth Muscle	Colon
34	chr3:52153600-52161000	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr3:52153800-52156600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:52153800-52156600	Strong transcription	Fetal Brain Female	brain
37	chr3:52153800-52157000	Weak transcription	Fetal Kidney	kidney
38	chr3:52154000-52157400	Enhancers	Primary hematopoietic stem cells	blood
39	chr3:52154000-52159600	Strong transcription	NHLF	lung
40	chr3:52154200-52157600	Genic enhancers	NHEK	skin
41	chr3:52154200-52157800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:52154400-52157200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:52154400-52157200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:52154400-52157200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr3:52154400-52157400	Enhancers	Primary B cells from cord blood	blood
46	chr3:52154400-52157600	Enhancers	Stomach Smooth Muscle	stomach
47	chr3:52154400-52157800	Enhancers	Primary B cells from peripheral blood	blood
48	chr3:52154400-52159000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:52154400-52160400	Strong transcription	Hela-S3	cervix
50	chr3:52154600-52157000	Enhancers	Skeletal Muscle Male	skeletal muscle

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