Variant report

Variant	rs11707515
Chromosome Location	chr3:69357338-69357339
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69210554..69213653-chr3:69354027..69357404,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1483895	0.82[CHB][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes]
rs1564757	0.80[JPT][hapmap]
rs17005647	0.80[JPT][hapmap]
rs1872152	0.81[CHB][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes]
rs2007584	0.80[JPT][hapmap]
rs2314990	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2314992	0.84[AMR][1000 genomes]
rs4290808	0.80[JPT][hapmap]
rs4428187	0.80[JPT][hapmap]
rs55728052	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6549198	1.00[CEU][hapmap];0.82[CHB][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6776474	0.80[JPT][hapmap]
rs7627492	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7649373	0.84[AMR][1000 genomes]
rs9833304	0.84[AMR][1000 genomes]
rs9867480	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69343800-69362200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:69344000-69370000	Weak transcription	Fetal Brain Male	brain
3	chr3:69344000-69370000	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:69347800-69357600	Weak transcription	Fetal Stomach	stomach
5	chr3:69348000-69369400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:69349200-69368800	Weak transcription	Fetal Brain Female	brain
7	chr3:69350000-69374200	Weak transcription	Aorta	Aorta
8	chr3:69353800-69357400	Enhancers	Brain Anterior Caudate	brain
9	chr3:69354600-69357600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr3:69355200-69357800	Enhancers	Brain Substantia Nigra	brain
11	chr3:69355200-69359000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:69355400-69357400	Enhancers	Brain Cingulate Gyrus	brain
13	chr3:69355600-69357600	Enhancers	Brain Angular Gyrus	brain
14	chr3:69355600-69359400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:69355800-69361800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:69356000-69361600	Strong transcription	NHEK	skin
17	chr3:69356000-69373200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:69356200-69357800	Weak transcription	HUVEC	blood vessel
19	chr3:69356200-69359000	Weak transcription	HSMM	muscle
20	chr3:69356200-69368800	Weak transcription	Fetal Heart	heart
21	chr3:69356200-69369800	Weak transcription	Fetal Lung	lung
22	chr3:69356400-69357600	Weak transcription	Spleen	Spleen
23	chr3:69356400-69361800	Weak transcription	HSMMtube	muscle
24	chr3:69356400-69371000	Weak transcription	Placenta	Placenta
25	chr3:69356400-69372000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:69356600-69359200	Strong transcription	Lung	lung
27	chr3:69356800-69358200	ZNF genes & repeats	Fetal Thymus	thymus
28	chr3:69356800-69358600	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr3:69356800-69359000	Weak transcription	Brain Hippocampus Middle	brain
30	chr3:69356800-69359400	Strong transcription	Thymus	Thymus
31	chr3:69356800-69361800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:69356800-69362600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:69356800-69362800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:69356800-69362800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr3:69357000-69357400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:69357000-69359400	Strong transcription	HMEC	breast
37	chr3:69357000-69362600	Strong transcription	Dnd41	blood
38	chr3:69357200-69357400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr3:69357200-69358600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:69357200-69362600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:69357200-69362800	Strong transcription	Primary monocytes fromperipheralblood	blood

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