Variant report

Variant	rs11707683
Chromosome Location	chr3:118911857-118911858
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12630690	0.84[CEU][hapmap]
rs12632242	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12637159	0.85[CEU][hapmap];0.89[ASN][1000 genomes]
rs13077850	0.86[AMR][1000 genomes]
rs13078534	0.86[AMR][1000 genomes]
rs3806695	0.95[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3806697	0.95[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41271389	0.86[AMR][1000 genomes]
rs4234657	0.84[CEU][hapmap]
rs4314161	0.84[CEU][hapmap]
rs4422293	0.80[CEU][hapmap]
rs4528932	0.84[CEU][hapmap]
rs4547690	0.84[CEU][hapmap]
rs4591498	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4603947	0.85[CEU][hapmap]
rs55651430	0.86[AMR][1000 genomes]
rs6438504	0.84[CEU][hapmap]
rs6438508	0.84[CEU][hapmap]
rs7610070	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7612800	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7612846	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7622158	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv527259	chr3:118906442-118916627	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv591362	chr3:118906442-118948155	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3406090	chr3:118909062-118912860	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118884000-118914200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:118901000-118924200	Weak transcription	Pancreas	Pancrea
3	chr3:118903400-118924200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:118904400-118912800	Weak transcription	NH-A	brain
5	chr3:118904400-118913000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:118904600-118936400	Weak transcription	Gastric	stomach
7	chr3:118904800-118913000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:118904800-118914400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:118908400-118928200	Weak transcription	Fetal Stomach	stomach
10	chr3:118908600-118914000	Weak transcription	Aorta	Aorta
11	chr3:118909200-118914800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:118910400-118913000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:118910800-118913400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:118911000-118912800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:118911200-118912800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:118911400-118912800	Enhancers	A549	lung
17	chr3:118911400-118913000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:118911400-118913000	Weak transcription	HMEC	breast
19	chr3:118911400-118913000	Weak transcription	NHEK	skin
20	chr3:118911800-118932600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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