Variant report
| Variant | rs11708516 |
|---|---|
| Chromosome Location | chr3:139508653-139508654 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11707166 | 0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11710391 | 0.98[ASN][1000 genomes] |
| rs11716660 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11921293 | 0.94[ASN][1000 genomes] |
| rs11921303 | 0.94[ASN][1000 genomes] |
| rs17315928 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17393618 | 0.94[ASN][1000 genomes] |
| rs17393660 | 0.94[ASN][1000 genomes] |
| rs17393848 | 0.99[ASN][1000 genomes] |
| rs1868172 | 0.95[ASN][1000 genomes] |
| rs56161455 | 0.94[ASN][1000 genomes] |
| rs59161850 | 0.94[ASN][1000 genomes] |
| rs59549192 | 0.94[ASN][1000 genomes] |
| rs60101099 | 0.94[ASN][1000 genomes] |
| rs62270255 | 0.94[ASN][1000 genomes] |
| rs62270256 | 0.94[ASN][1000 genomes] |
| rs62271861 | 0.94[ASN][1000 genomes] |
| rs6772801 | 0.90[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6789124 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72975869 | 0.94[ASN][1000 genomes] |
| rs73223080 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73223086 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7430535 | 0.98[ASN][1000 genomes] |
| rs765193 | 0.94[ASN][1000 genomes] |
| rs765194 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003154 | chr3:139060841-139788752 | ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv536729 | chr3:139060841-139788752 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv916193 | chr3:139187767-139821526 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 4 | nsv530058 | chr3:139243971-139814419 | Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:139508600-139508800 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
