Variant report

Variant	rs11708554
Chromosome Location	chr3:70585173-70585174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11712577	0.84[AMR][1000 genomes]
rs11918342	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11929694	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12629093	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12634194	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1491606	0.87[EUR][1000 genomes]
rs1491607	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1873566	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55732253	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56196000	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56322472	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56333904	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62256300	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7627684	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7627883	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9856709	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70581600-70592000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:70583200-70585600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:70584400-70585600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:70585000-70585200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:70585000-70585200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:70585000-70585600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:70585000-70586000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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