Variant report

Variant	rs117100727
Chromosome Location	chr8:52580024-52580025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv831313	chr8:52458835-52638968	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv890898	chr8:52579964-52680933	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52566400-52580800	Weak transcription	Aorta	Aorta
2	chr8:52577800-52580200	Weak transcription	Psoas Muscle	Psoas
3	chr8:52577800-52580200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr8:52578000-52580200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:52578600-52580600	Enhancers	Fetal Heart	heart
6	chr8:52578600-52580800	Enhancers	Right Atrium	heart
7	chr8:52578800-52580600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr8:52579200-52580200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:52579200-52580600	Enhancers	Fetal Muscle Leg	muscle
10	chr8:52579200-52581000	Enhancers	Left Ventricle	heart
11	chr8:52579400-52580200	Enhancers	Fetal Muscle Trunk	muscle
12	chr8:52579600-52580400	Enhancers	Hela-S3	cervix
13	chr8:52579800-52580200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:52579800-52580400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:52579800-52580400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:52579800-52580400	Enhancers	Fetal Kidney	kidney
17	chr8:52579800-52580400	Weak transcription	Right Ventricle	heart
18	chr8:52579800-52580600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:52579800-52580600	Enhancers	Fetal Lung	lung
20	chr8:52579800-52580800	Enhancers	Adipose Nuclei	Adipose
21	chr8:52580000-52580400	Flanking Active TSS	NH-A	brain

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