Variant report

Variant	rs11712077
Chromosome Location	chr3:100164261-100164262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1132022	0.86[EUR][1000 genomes]
rs35925258	0.81[ASN][1000 genomes]
rs4928050	0.84[EUR][1000 genomes]
rs4928071	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6797397	0.86[EUR][1000 genomes]
rs7434167	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7434244	0.86[EUR][1000 genomes]
rs9290059	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9820973	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840370	0.87[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11712077	LNP1	cis	Muscle Skeletal	GTEx
rs11712077	TOMM70A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100144200-100175600	Weak transcription	Psoas Muscle	Psoas
2	chr3:100146400-100177800	Weak transcription	Ovary	ovary
3	chr3:100148200-100182400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:100149400-100171800	Weak transcription	Aorta	Aorta
5	chr3:100158400-100176400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:100161000-100169600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:100163000-100177200	Weak transcription	HepG2	liver
8	chr3:100163400-100176400	Weak transcription	Fetal Lung	lung
9	chr3:100164200-100164400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
10	chr3:100164200-100164400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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