Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112838001..112839541-chr3:112853891..112856823,2	MCF-7	breast:
2	chr3:112831326..112834195-chr3:112837438..112839554,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10511319	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10934222	0.86[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs11716722	0.95[ASN][1000 genomes]
rs11720141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923603	0.80[CHB][hapmap]
rs12631163	0.85[ASN][1000 genomes]
rs12631199	0.86[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs12634099	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2178398	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2204788	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2204789	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2700229	0.90[ASN][1000 genomes]
rs3732812	0.91[ASN][1000 genomes]
rs3995932	0.87[ASN][1000 genomes]
rs4528911	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4555493	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5028175	0.91[AMR][1000 genomes]
rs62262801	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62264166	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6770160	0.91[ASN][1000 genomes]
rs753693	0.80[ASN][1000 genomes]
rs871595	0.81[ASN][1000 genomes]
rs9855348	0.85[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877345	chr3:112826253-112848851	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112835800-112840600	Enhancers	Fetal Stomach	stomach
2	chr3:112837000-112842200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:112837600-112839200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:112837600-112842800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:112837600-112842800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:112837600-112842800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:112837800-112839000	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:112837800-112840000	Weak transcription	Fetal Lung	lung
9	chr3:112838400-112839400	Weak transcription	Fetal Muscle Trunk	muscle

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