Variant report
| Variant | rs11712910 |
|---|---|
| Chromosome Location | chr3:53094194-53094195 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SFMBT1-1 | chr3:53093658-53094908 | l_2369_chr3:53093657-53096607_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11923593 | 0.86[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12632240 | 0.92[ASN][1000 genomes] |
| rs12632259 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2244461 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2581776 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2581777 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2581790 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2581792 | 1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2581799 | 1.00[YRI][hapmap] |
| rs2581806 | 0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2581808 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2581809 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2581811 | 0.86[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2581812 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2581818 | 0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2952830 | 1.00[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs7613013 | 0.86[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7617501 | 0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7625909 | 0.96[ASN][1000 genomes] |
| rs7647313 | 0.95[ASN][1000 genomes] |
| rs7647960 | 0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9818819 | 0.86[AMR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1818974 | chr3:52966316-53096394 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv876800 | chr3:53038786-53113762 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | esv1820544 | chr3:53046712-53096394 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv822094 | chr3:53059674-53096460 | Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
