Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13325101	0.88[ASN][1000 genomes]
rs1522115	0.87[JPT][hapmap]
rs1529269	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1851352	0.90[ASN][1000 genomes]
rs1851353	0.90[ASN][1000 genomes]
rs2056598	0.93[JPT][hapmap]
rs2204095	0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2339932	0.93[JPT][hapmap]
rs6764772	0.93[JPT][hapmap]
rs6788776	0.88[ASN][1000 genomes]
rs6797922	0.89[CEU][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6800148	0.87[JPT][hapmap]
rs7640838	0.90[ASN][1000 genomes]
rs940522	0.87[JPT][hapmap]
rs9816641	0.89[CEU][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs9826864	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs9828423	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9828621	0.87[JPT][hapmap]
rs9856007	0.93[JPT][hapmap]
rs9866193	0.95[CEU][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1000756	chr3:179672703-179827373	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179766800-179768000	Enhancers	Dnd41	blood
2	chr3:179767000-179767600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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