Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10446299	0.86[ASN][1000 genomes]
rs10446301	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10934214	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11706764	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11710613	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12490614	0.92[ASN][1000 genomes]
rs12494027	0.80[ASN][1000 genomes]
rs13063281	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17236941	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17236976	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17237146	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17309371	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34944759	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34958128	0.80[ASN][1000 genomes]
rs58558006	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62265105	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6438127	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6767661	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6780637	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7621460	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7643398	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7647147	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112771000-112798600	Weak transcription	Psoas Muscle	Psoas
2	chr3:112784600-112792600	Weak transcription	Left Ventricle	heart
3	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
4	chr3:112787000-112791400	Weak transcription	Primary T cells from cord blood	blood
5	chr3:112790400-112798400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: