Variant report

Variant	rs11715148
Chromosome Location	chr3:118653530-118653531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:118650890..118655376-chr3:118655958..118658547,6	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1016284	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11709001	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709968	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922973	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12053925	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1435653	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16829222	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17738897	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836689	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1836691	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1879553	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2160050	0.90[ASN][1000 genomes]
rs4405907	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4687834	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687960	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4687962	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55742142	0.91[ASN][1000 genomes]
rs56232409	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56234333	0.91[ASN][1000 genomes]
rs60755482	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7636874	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118620200-118663200	Weak transcription	Pancreas	Pancrea
2	chr3:118645200-118661600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:118645800-118661600	Weak transcription	Left Ventricle	heart
4	chr3:118647600-118661000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:118649200-118655600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:118651800-118661200	Weak transcription	Right Atrium	heart
7	chr3:118652200-118653800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:118652200-118655400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:118652200-118655400	Weak transcription	Adipose Nuclei	Adipose
10	chr3:118652600-118653800	Enhancers	Psoas Muscle	Psoas
11	chr3:118652600-118653800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr3:118652600-118655400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:118652600-118655400	Weak transcription	Brain Substantia Nigra	brain
14	chr3:118652800-118655600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:118652800-118655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:118653000-118653800	Enhancers	Ovary	ovary
17	chr3:118653000-118660600	Weak transcription	Brain Angular Gyrus	brain
18	chr3:118653200-118655600	Weak transcription	K562	blood
19	chr3:118653400-118653600	Enhancers	Brain Hippocampus Middle	brain
20	chr3:118653400-118654000	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links