Variant report

Variant	rs11715389
Chromosome Location	chr3:47015196-47015197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46959018..46961280-chr3:47014684..47016373,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4408896	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6442050	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536558	chr3:46706571-47024756	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv876755	chr3:46895109-47061183	Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1012682	chr3:46973552-47016357	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3461834	chr3:46977730-47173228	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv3461835	chr3:46977822-47173168	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv3461836	chr3:46977822-47173168	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1009396	chr3:46994991-47048166	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
9	esv1800172	chr3:47013346-47049306	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv3416192	chr3:47014913-47017316	Weak transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47003200-47015800	Weak transcription	Fetal Brain Male	brain
2	chr3:47003200-47016800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:47004800-47017200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:47004800-47017200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:47006600-47017000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:47007000-47017400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:47007200-47017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:47007600-47016200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:47007600-47017200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:47007600-47017200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:47007600-47017400	Weak transcription	HSMMtube	muscle
12	chr3:47008400-47015600	Weak transcription	Hela-S3	cervix
13	chr3:47009200-47017200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:47010600-47015400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:47011200-47015600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:47011200-47017200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:47011200-47017200	Weak transcription	Aorta	Aorta
18	chr3:47011400-47016200	Weak transcription	HMEC	breast
19	chr3:47012200-47015800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr3:47012600-47016000	Enhancers	Primary B cells from peripheral blood	blood
21	chr3:47012800-47015800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:47012800-47017200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr3:47013000-47015600	Weak transcription	Colonic Mucosa	Colon
24	chr3:47013000-47015600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr3:47013000-47015800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr3:47013000-47015800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:47013000-47015800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:47013000-47015800	Enhancers	Liver	Liver
29	chr3:47013000-47015800	Weak transcription	Brain Germinal Matrix	brain
30	chr3:47013000-47015800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr3:47013000-47015800	Enhancers	HepG2	liver
32	chr3:47013000-47015800	Weak transcription	NHDF-Ad	bronchial
33	chr3:47013000-47016200	Weak transcription	NHLF	lung
34	chr3:47013000-47016400	Weak transcription	Fetal Brain Female	brain
35	chr3:47013200-47015600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:47013200-47015800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr3:47013200-47016200	Weak transcription	Osteobl	bone
38	chr3:47013200-47017400	Weak transcription	Fetal Kidney	kidney
39	chr3:47013400-47015200	Weak transcription	Right Atrium	heart
40	chr3:47013400-47015200	Weak transcription	Right Ventricle	heart
41	chr3:47013400-47015400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr3:47013400-47015400	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr3:47013400-47015600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr3:47013400-47015600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr3:47013400-47015600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:47013400-47015600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr3:47013400-47015800	Enhancers	Primary T cells fromperipheralblood	blood
48	chr3:47013400-47015800	Weak transcription	Brain Anterior Caudate	brain
49	chr3:47013400-47015800	Weak transcription	Gastric	stomach
50	chr3:47013400-47015800	Weak transcription	Ovary	ovary

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