Variant report

Variant	rs11715875
Chromosome Location	chr3:100611613-100611614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100603772..100606163-chr3:100611320..100613535,2	K562	blood:

Variant related genes	Relation type
ENSG00000154175	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1017438	0.87[ASN][1000 genomes]
rs11720318	0.87[ASN][1000 genomes]
rs13079711	0.80[ASN][1000 genomes]
rs2118170	0.87[ASN][1000 genomes]
rs2118171	0.87[ASN][1000 genomes]
rs3732898	0.93[EUR][1000 genomes]
rs4928057	0.81[ASN][1000 genomes]
rs62277104	0.87[ASN][1000 genomes]
rs68184622	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv514163	chr3:100547342-100670846	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100594400-100618200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:100594600-100616800	Weak transcription	Ovary	ovary
3	chr3:100598600-100612400	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:100599600-100645400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:100599800-100618200	Weak transcription	Fetal Lung	lung
6	chr3:100602200-100616800	Weak transcription	NHDF-Ad	bronchial
7	chr3:100604200-100612200	Weak transcription	Psoas Muscle	Psoas
8	chr3:100604200-100617000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:100606600-100612000	Enhancers	Hela-S3	cervix
10	chr3:100610200-100612200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:100610400-100612000	Strong transcription	Stomach Smooth Muscle	stomach
12	chr3:100610400-100613400	Strong transcription	Fetal Muscle Leg	muscle
13	chr3:100610400-100617600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:100610600-100612200	Strong transcription	Fetal Stomach	stomach
15	chr3:100610600-100617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:100610600-100619200	Weak transcription	Fetal Intestine Large	intestine
17	chr3:100610800-100617000	Weak transcription	HSMM	muscle
18	chr3:100611000-100611800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:100611000-100613000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:100611000-100613000	Genic enhancers	Osteobl	bone
21	chr3:100611200-100613200	Strong transcription	HSMMtube	muscle
22	chr3:100611400-100611800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr3:100611400-100613000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr3:100611600-100612600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr3:100611600-100612800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:100611600-100612800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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