Variant report

Variant	rs11716021
Chromosome Location	chr3:17134357-17134358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3924971	0.81[CEU][hapmap]
rs4334629	0.81[CEU][hapmap]
rs4472039	0.84[CEU][hapmap]
rs4563393	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4618210	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.87[TSI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4685409	0.81[CHD][hapmap]
rs4685427	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs4685428	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6442667	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6765957	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6780191	0.81[CHD][hapmap]
rs7653027	0.81[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11716021	CHCHD4	cis	parietal	SCAN

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
2	chr3:17103400-17134400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:17112200-17137400	Weak transcription	Brain Germinal Matrix	brain
4	chr3:17112600-17135800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:17112800-17135200	Weak transcription	Fetal Brain Male	brain
6	chr3:17120400-17135000	Weak transcription	HUVEC	blood vessel
7	chr3:17121000-17134400	Weak transcription	Gastric	stomach
8	chr3:17122800-17136000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:17127200-17136000	Weak transcription	Fetal Intestine Small	intestine
10	chr3:17129000-17134600	Enhancers	Psoas Muscle	Psoas
11	chr3:17129000-17141400	Weak transcription	Fetal Brain Female	brain
12	chr3:17129600-17134600	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr3:17130000-17135800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:17130200-17134600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:17130400-17143400	Weak transcription	Thymus	Thymus
16	chr3:17130600-17135400	Weak transcription	Fetal Thymus	thymus
17	chr3:17130800-17135000	Weak transcription	Ovary	ovary
18	chr3:17130800-17136000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:17130800-17136000	Weak transcription	Right Ventricle	heart
20	chr3:17130800-17137000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr3:17131200-17134400	Strong transcription	Liver	Liver
22	chr3:17131200-17135400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr3:17131200-17143800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:17131400-17134600	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr3:17131600-17136200	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:17131800-17134800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr3:17132000-17134400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr3:17132000-17135000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:17132000-17135000	Strong transcription	Left Ventricle	heart
30	chr3:17132000-17136000	Weak transcription	Right Atrium	heart
31	chr3:17132400-17134400	Weak transcription	Spleen	Spleen
32	chr3:17132400-17134600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr3:17132400-17135600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr3:17132400-17135800	Weak transcription	Fetal Heart	heart
35	chr3:17132800-17134600	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr3:17132800-17134600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:17132800-17135000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:17133000-17134600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr3:17133000-17134600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:17133000-17134600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:17133000-17134600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr3:17133000-17134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:17133000-17135600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr3:17133000-17136200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr3:17133000-17137000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:17133200-17134600	Enhancers	Hela-S3	cervix
47	chr3:17133600-17135600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr3:17133600-17142600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr3:17133800-17135600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:17133800-17137400	Weak transcription	Primary B cells from cord blood	blood

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